Difference between revisions of "FSU RS14600"

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(Created page with "Category:reaction == Reaction RXN-10819 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.30 ec-6.2.1.30] * direction: ** left-to-right * common-name: ** phenylacetate...")
(Created page with "Category:gene == Gene FSU_RS14600 == * transcription-direction: ** positive * centisome-position: ** 92.407555 * left-end-position: ** 3551226 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-10819 ==
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== Gene FSU_RS14600 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/6.2.1.30 ec-6.2.1.30]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 92.407555   
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* common-name:
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* left-end-position:
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** phenylacetate--coa ligase
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** 3551226
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== Reaction formula ==
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* right-end-position:
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[PHENYLACETATE]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[CPD-207]][c] '''+''' 1 [[PPI]][c]
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** 3552038
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS12610]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[THYMIDYLATESYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[1CMET2-PWY]]
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* Gene: [[FISUC_RS10645]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY0-166]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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** '''11''' reactions found over '''13''' reactions in the full pathway
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== Pathway(s)  ==
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* [[PWY-7187]]
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* [[PWY-7716]], penicillin G and penicillin V biosynthesis:
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** '''7''' reactions found over '''7''' reactions in the full pathway
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7210]]
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* [[PWY-6318]], L-phenylalanine degradation IV (mammalian, via side chain):
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** '''6''' reactions found over '''8''' reactions in the full pathway
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** '''3''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7199]]
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* [[PWY0-321]], phenylacetate degradation I (aerobic):
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** '''3''' reactions found over '''5''' reactions in the full pathway
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** '''1''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-3841]]
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* [[PWY-1341]], phenylacetate degradation II (anaerobic):
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** '''10''' reactions found over '''11''' reactions in the full pathway
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7184]]
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== Reconstruction information  ==
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7198]]
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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** '''5''' reactions found over '''7''' reactions in the full pathway
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== External links  ==
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{{#set: transcription-direction=positive}}
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* RHEA:
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{{#set: centisome-position=92.407555    }}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=20957 20957]
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{{#set: left-end-position=3551226}}
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* LIGAND-RXN:
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{{#set: right-end-position=3552038}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02539 R02539]
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{{#set: organism associated=fsucgem}}
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{{#set: ec-number=ec-6.2.1.30}}
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{{#set: nb reaction associated=1}}
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{{#set: direction=left-to-right}}
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{{#set: nb pathway associated=8}}
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{{#set: common-name=phenylacetate--coa ligase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=4}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=ecoli|genome}}
 

Latest revision as of 11:20, 17 October 2022

Gene FSU_RS14600

  • transcription-direction:
    • positive
  • centisome-position:
    • 92.407555
  • left-end-position:
    • 3551226
  • right-end-position:
    • 3552038

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • 1CMET2-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY0-166
    • 11 reactions found over 13 reactions in the full pathway
  • PWY-7187
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-7210
    • 6 reactions found over 8 reactions in the full pathway
  • PWY-7199
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-3841
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7184
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7198
    • 5 reactions found over 7 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS14600&oldid=94333"