Difference between revisions of "FSU RS08165"

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(Created page with "Category:reaction == Reaction RXN0-302 == * ec-number: ** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12] * direction: ** left-to-right * common-name: ** 2-c-methyl-d-e...")
(Created page with "Category:gene == Gene FSU_RS08165 == * transcription-direction: ** negative * centisome-position: ** 52.165234 * left-end-position: ** 2004712 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN0-302 ==
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== Gene FSU_RS08165 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.6.1.12 ec-4.6.1.12]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 52.165234   
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* common-name:
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* left-end-position:
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** 2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase
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** 2004712
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== Reaction formula ==
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* right-end-position:
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* 1 [[2-PHOSPHO-4-CYTIDINE-5-DIPHOSPHO-2-C-MET]][c] '''=>''' 1 [[2C-METH-D-ERYTHRITOL-CYCLODIPHOSPHATE]][c] '''+''' 1 [[CMP]][c]
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** 2005878
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS10755]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[PRPPSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS12720]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
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* [[PWY0-662]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** '''1''' reactions found over '''1''' reactions in the full pathway
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** Category: [[orthology]]
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{{#set: transcription-direction=negative}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: centisome-position=52.165234    }}
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: left-end-position=2004712}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: right-end-position=2005878}}
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== Pathway(s) ==
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{{#set: organism associated=fsucgem}}
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* [[PWY-7560]], methylerythritol phosphate pathway II:
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{{#set: nb reaction associated=1}}
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** '''9''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb pathway associated=1}}
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* [[NONMEVIPP-PWY]], methylerythritol phosphate pathway I:
 
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** '''9''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=23865 23865]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R05637 R05637]
 
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{{#set: ec-number=ec-4.6.1.12}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=2-c-methyl-d-erythritol 2,4-cyclodiphosphate synthase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron|genome|bifidobacterium|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS08165

  • transcription-direction:
    • negative
  • centisome-position:
    • 52.165234
  • left-end-position:
    • 2004712
  • right-end-position:
    • 2005878

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY0-662
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS08165&oldid=94348"