Difference between revisions of "FISUC RS14280"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42] * direction: ** reversible * common-...")
(Created page with "Category:gene == Gene FISUC_RS14280 == * transcription-direction: ** positive * centisome-position: ** 91.17892 * left-end-position: ** 3503673 * right-end-position: *...")
 
(8 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction BRANCHED-CHAINAMINOTRANSFERVAL-RXN ==
+
== Gene FISUC_RS14280 ==
−
* ec-number:
+
* transcription-direction:
−
** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
+
** positive
−
* direction:
+
* centisome-position:
−
** reversible
+
** 91.17892   
−
* common-name:
+
* left-end-position:
−
** branched-chain amino acid aminotransferase
+
** 3503673
−
== Reaction formula ==
+
* right-end-position:
−
* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[VAL]][c] '''<=>''' 1 [[2-KETO-ISOVALERATE]][c] '''+''' 1 [[GLT]][c]
+
** 3505604
−
== Gene(s) associated with this reaction  ==
+
== Organism(s) associated with this gene  ==
−
* Gene: [[FSU_RS05135]]
+
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[ATPASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[ATPSYN-RXN]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS03245]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
== Pathway(s) ==
+
== Pathway(s) associated ==
−
* [[ALANINE-VALINESYN-PWY]], L-alanine biosynthesis I:
+
* [[PWY-7980]]
−
** '''3''' reactions found over '''3''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[VALSYN-PWY]], L-valine biosynthesis:
+
{{#set: transcription-direction=positive}}
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
{{#set: centisome-position=91.17892    }}
−
* [[PWY-5057]], L-valine degradation II:
+
{{#set: left-end-position=3503673}}
−
** '''2''' reactions found over '''3''' reactions in the full pathway
+
{{#set: right-end-position=3505604}}
−
* [[VALDEG-PWY]], L-valine degradation I:
+
{{#set: organism associated=fsucgem}}
−
** '''1''' reactions found over '''8''' reactions in the full pathway
+
{{#set: nb reaction associated=2}}
−
== Reconstruction information  ==
+
{{#set: nb pathway associated=1}}
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24816 24816]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01214 R01214]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
 
−
** [http://www.uniprot.org/uniprot/P38891 P38891]
 
−
** [http://www.uniprot.org/uniprot/P47176 P47176]
 
−
** [http://www.uniprot.org/uniprot/O86505 O86505]
 
−
** [http://www.uniprot.org/uniprot/O14370 O14370]
 
−
** [http://www.uniprot.org/uniprot/O32954 O32954]
 
−
** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 
−
{{#set: ec-number=ec-2.6.1.42}}
 
−
{{#set: direction=reversible}}
 
−
{{#set: common-name=branched-chain amino acid aminotransferase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=4}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron|plantarum|genome|bifidobacterium}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS14280

  • transcription-direction:
    • positive
  • centisome-position:
    • 91.17892
  • left-end-position:
    • 3503673
  • right-end-position:
    • 3505604

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7980
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS14280&oldid=94350"