Difference between revisions of "FISUC RS04955"

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(Created page with "Category:reaction == Reaction ACETATEKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15] ** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1] * di...")
(Created page with "Category:gene == Gene FISUC_RS04955 == * common-name: ** aepy * transcription-direction: ** negative * centisome-position: ** 31.790192 * left-end-position: ** 1221581...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACETATEKIN-RXN ==
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== Gene FISUC_RS04955 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.7.2.15 ec-2.7.2.15]
 
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** [http://enzyme.expasy.org/EC/2.7.2.1 ec-2.7.2.1]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** acetate kinase
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** aepy
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== Reaction formula ==
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* transcription-direction:
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* 1 [[ACET]][c] '''+''' 1 [[ATP]][c] '''<=>''' 1 [[ACETYL-P]][c] '''+''' 1 [[ADP]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS09410]]
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** 31.790192   
 +
* left-end-position:
 +
** 1221581
 +
* right-end-position:
 +
** 1222708
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[4.1.1.82-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6682]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''2''' reactions found over '''10''' reactions in the full pathway
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7769]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''2''' reactions found over '''25''' reactions in the full pathway
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6839]]
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* Gene: [[FISUC_RS07485]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-7510]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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** '''2''' reactions found over '''12''' reactions in the full pathway
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* Gene: [[FSU_RS04650]]
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* [[PWY-5757]]
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** Category: [[orthology]]
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** '''2''' reactions found over '''7''' reactions in the full pathway
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6322]]
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== Pathway(s) ==
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** '''2''' reactions found over '''25''' reactions in the full pathway
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: common-name=aepy}}
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* [[P163-PWY]], L-lysine fermentation to acetate and butanoate:
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{{#set: transcription-direction=negative}}
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** '''3''' reactions found over '''10''' reactions in the full pathway
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{{#set: centisome-position=31.790192    }}
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* [[P124-PWY]], Bifidobacterium shunt:
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{{#set: left-end-position=1221581}}
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** '''14''' reactions found over '''15''' reactions in the full pathway
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{{#set: right-end-position=1222708}}
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* [[PWY0-1312]], acetate and ATP formation from acetyl-CoA I:
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{{#set: organism associated=fsucgem}}
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** '''2''' reactions found over '''2''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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* [[PWY-8015]], glycine degradation (Stickland reaction):
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{{#set: nb pathway associated=6}}
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** '''1''' reactions found over '''2''' reactions in the full pathway
 
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* [[PWY-5482]], pyruvate fermentation to acetate II:
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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* [[P3-PWY]], gallate degradation III (anaerobic):
 
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** '''2''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-5485]], pyruvate fermentation to acetate IV:
 
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** '''4''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
 
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** '''9''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY0-1477]], ethanolamine utilization:
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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* [[PWY-5497]], purine nucleobases degradation II (anaerobic):
 
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** '''9''' reactions found over '''24''' reactions in the full pathway
 
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* [[P164-PWY]], purine nucleobases degradation I (anaerobic):
 
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** '''3''' reactions found over '''17''' reactions in the full pathway
 
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* [[FERMENTATION-PWY]], mixed acid fermentation:
 
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** '''16''' reactions found over '''16''' reactions in the full pathway
 
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* [[METH-ACETATE-PWY]], methanogenesis from acetate:
 
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** '''2''' reactions found over '''6''' reactions in the full pathway
 
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* [[P161-PWY]], acetylene degradation (anaerobic):
 
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** '''4''' reactions found over '''5''' reactions in the full pathway
 
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</div>
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11355 11355]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00315 R00315]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9JTM0 Q9JTM0]
 
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** [http://www.uniprot.org/uniprot/P38502 P38502]
 
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** [http://www.uniprot.org/uniprot/P37877 P37877]
 
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** [http://www.uniprot.org/uniprot/Q9PPL8 Q9PPL8]
 
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** [http://www.uniprot.org/uniprot/Q9CE36 Q9CE36]
 
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** [http://www.uniprot.org/uniprot/P47599 P47599]
 
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** [http://www.uniprot.org/uniprot/Q9CE35 Q9CE35]
 
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** [http://www.uniprot.org/uniprot/Q9JT07 Q9JT07]
 
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** [http://www.uniprot.org/uniprot/P44406 P44406]
 
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** [http://www.uniprot.org/uniprot/P0A6A3 P0A6A3]
 
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** [http://www.uniprot.org/uniprot/P73162 P73162]
 
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{{#set: ec-number=ec-2.7.2.15|ec-2.7.2.1}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=acetate kinase}}
 
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{{#set: nb gene associated=3}}
 
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{{#set: nb pathway associated=14}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS04955

  • common-name:
    • aepy
  • transcription-direction:
    • negative
  • centisome-position:
    • 31.790192
  • left-end-position:
    • 1221581
  • right-end-position:
    • 1222708

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6682
    • 2 reactions found over 10 reactions in the full pathway
  • PWY-7769
    • 2 reactions found over 25 reactions in the full pathway
  • PWY-6839
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-7510
    • 2 reactions found over 12 reactions in the full pathway
  • PWY-5757
    • 2 reactions found over 7 reactions in the full pathway
  • PWY-6322
    • 2 reactions found over 25 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS04955&oldid=94357"