Difference between revisions of "FSU RS00180"

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(Created page with "Category:reaction == Reaction DIHYDRODIPICSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.3.3.7 ec-4.3.3.7] * direction: ** left-to-right * common-name: ** 4-hyd...")
(Created page with "Category:gene == Gene FSU_RS00180 == * transcription-direction: ** negative * centisome-position: ** 1.041581 * left-end-position: ** 40028 * right-end-position: ** 41...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DIHYDRODIPICSYN-RXN ==
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== Gene FSU_RS00180 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.3.3.7 ec-4.3.3.7]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 1.041581   
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* common-name:
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* left-end-position:
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** 4-hydroxy-tetrahydrodipicolinate synthase
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** 40028
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* synonymous:
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* right-end-position:
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** dihydropicolinate synthetase
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** 41236
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** dihydrodipicolinic acid synthase
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== Organism(s) associated with this gene  ==
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== Reaction formula ==
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* [[fsucgem]]
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* 1 [[L-ASPARTATE-SEMIALDEHYDE]][c] '''+''' 1 [[PYRUVATE]][c] '''=>''' 1 [[CPD-14443]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[WATER]][c]
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== Reaction(s) associated ==
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== Gene(s) associated with this reaction  ==
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* [[S-ADENMETSYN-RXN]]
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* Gene: [[FSU_RS03675]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS01795]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s) ==
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-2941]], L-lysine biosynthesis II:
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** '''6''' reactions found over '''9''' reactions in the full pathway
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5097]], L-lysine biosynthesis VI:
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== Pathway(s) associated ==
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[METHIONINE-DEG1-PWY]]
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* [[DAPLYSINESYN-PWY]], L-lysine biosynthesis I:
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** '''3''' reactions found over '''3''' reactions in the full pathway
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5041]]
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* [[PWY-2942]], L-lysine biosynthesis III:
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[SAM-PWY]]
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== Reconstruction information  ==
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[ETHYL-PWY]]
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== External links  ==
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** '''1''' reactions found over '''3''' reactions in the full pathway
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-5912]]
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* LIGAND-RXN:
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** '''1''' reactions found over '''4''' reactions in the full pathway
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** [http://www.genome.jp/dbget-bin/www_bget?R10147 R10147]
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{{#set: transcription-direction=negative}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02292 R02292]
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{{#set: centisome-position=1.041581    }}
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* UNIPROT:
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{{#set: left-end-position=40028}}
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** [http://www.uniprot.org/uniprot/P43797 P43797]
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{{#set: right-end-position=41236}}
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** [http://www.uniprot.org/uniprot/O26892 O26892]
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{{#set: organism associated=fsucgem}}
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** [http://www.uniprot.org/uniprot/Q9Z6K9 Q9Z6K9]
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{{#set: nb reaction associated=1}}
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** [http://www.uniprot.org/uniprot/Q9X1K9 Q9X1K9]
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{{#set: nb pathway associated=5}}
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** [http://www.uniprot.org/uniprot/P19808 P19808]
 
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** [http://www.uniprot.org/uniprot/Q9ZM13 Q9ZM13]
 
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** [http://www.uniprot.org/uniprot/O05969 O05969]
 
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** [http://www.uniprot.org/uniprot/Q9CF61 Q9CF61]
 
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** [http://www.uniprot.org/uniprot/Q04796 Q04796]
 
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** [http://www.uniprot.org/uniprot/Q57695 Q57695]
 
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** [http://www.uniprot.org/uniprot/O25657 O25657]
 
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** [http://www.uniprot.org/uniprot/O67216 O67216]
 
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** [http://www.uniprot.org/uniprot/O29352 O29352]
 
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** [http://www.uniprot.org/uniprot/O84366 O84366]
 
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** [http://www.uniprot.org/uniprot/Q9PPB4 Q9PPB4]
 
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** [http://www.uniprot.org/uniprot/P63945 P63945]
 
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** [http://www.uniprot.org/uniprot/Q9JUU9 Q9JUU9]
 
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** [http://www.uniprot.org/uniprot/Q9LZX6 Q9LZX6]
 
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** [http://www.uniprot.org/uniprot/Q43038 Q43038]
 
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** [http://www.uniprot.org/uniprot/P49423 P49423]
 
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** [http://www.uniprot.org/uniprot/Q55513 Q55513]
 
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** [http://www.uniprot.org/uniprot/P0A6L2 P0A6L2]
 
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** [http://www.uniprot.org/uniprot/Q42948 Q42948]
 
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** [http://www.uniprot.org/uniprot/Q42940 Q42940]
 
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** [http://www.uniprot.org/uniprot/O86841 O86841]
 
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** [http://www.uniprot.org/uniprot/P24847 P24847]
 
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** [http://www.uniprot.org/uniprot/P24846 P24846]
 
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</div>
 
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{{#set: ec-number=ec-4.3.3.7}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=4-hydroxy-tetrahydrodipicolinate synthase}}
 
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{{#set: synonymous=dihydropicolinate synthetase|dihydrodipicolinic acid synthase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=4}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS00180

  • transcription-direction:
    • negative
  • centisome-position:
    • 1.041581
  • left-end-position:
    • 40028
  • right-end-position:
    • 41236

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • METHIONINE-DEG1-PWY
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5041
    • 4 reactions found over 4 reactions in the full pathway
  • SAM-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • ETHYL-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-5912
    • 1 reactions found over 4 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS00180&oldid=94589"