Difference between revisions of "FSU RS13425"

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(Created page with "Category:reaction == Reaction DTMPKI-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12] ** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13] ** [ht...")
(Created page with "Category:gene == Gene FSU_RS13425 == * transcription-direction: ** positive * centisome-position: ** 84.64709 * left-end-position: ** 3252991 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DTMPKI-RXN ==
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== Gene FSU_RS13425 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.4.12 ec-2.7.4.12]
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** positive
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** [http://enzyme.expasy.org/EC/2.7.4.13 ec-2.7.4.13]
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* centisome-position:
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** [http://enzyme.expasy.org/EC/2.7.4.9 ec-2.7.4.9]
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** 84.64709   
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* direction:
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* left-end-position:
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** left-to-right
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** 3252991
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* common-name:
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* right-end-position:
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** dtmp kinase
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** 3254076
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[ATP]][c] '''+''' 1 [[TMP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TDP]][c]
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* [[fsucgem]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[FISUC_RS07295]]
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* [[HISTAMINOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS09210]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
* [[TYROSINE-AMINOTRANSFERASE-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s) ==
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== Pathway(s) associated ==
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** '''11''' reactions found over '''13''' reactions in the full pathway
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* [[HISTSYN-PWY]]
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
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** '''10''' reactions found over '''10''' reactions in the full pathway
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-3581]]
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
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** '''2''' reactions found over '''11''' reactions in the full pathway
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[TYRSYN]]
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
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** '''3''' reactions found over '''3''' reactions in the full pathway
 +
* [[PWY-5048]]
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** '''1''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-5886]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
 +
* [[PWY-8016]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY3O-4108]]
 
** '''4''' reactions found over '''4''' reactions in the full pathway
 
** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
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* [[PWY-5151]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
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* [[TYRFUMCAT-PWY]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
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* [[PWY-7514]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-7518]]
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5754]]
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== External links  ==
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{{#set: transcription-direction=positive}}
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* RHEA:
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{{#set: centisome-position=84.64709    }}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13518 13518]
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{{#set: left-end-position=3252991}}
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* LIGAND-RXN:
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{{#set: right-end-position=3254076}}
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** [http://www.genome.jp/dbget-bin/www_bget?R02094 R02094]
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{{#set: organism associated=fsucgem}}
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* UNIPROT:
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{{#set: nb reaction associated=2}}
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** [http://www.uniprot.org/uniprot/Q57741 Q57741]
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{{#set: nb pathway associated=12}}
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** [http://www.uniprot.org/uniprot/Q9PPF3 Q9PPF3]
 
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** [http://www.uniprot.org/uniprot/P0A720 P0A720]
 
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** [http://www.uniprot.org/uniprot/Q8X8H7 Q8X8H7]
 
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** [http://www.uniprot.org/uniprot/Q9JVE7 Q9JVE7]
 
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** [http://www.uniprot.org/uniprot/P33803 P33803]
 
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** [http://www.uniprot.org/uniprot/P42490 P42490]
 
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** [http://www.uniprot.org/uniprot/P00572 P00572]
 
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** [http://www.uniprot.org/uniprot/Q80HT9 Q80HT9]
 
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** [http://www.uniprot.org/uniprot/P68693 P68693]
 
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** [http://www.uniprot.org/uniprot/P23919 P23919]
 
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** [http://www.uniprot.org/uniprot/P36590 P36590]
 
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** [http://www.uniprot.org/uniprot/Q9RA29 Q9RA29]
 
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** [http://www.uniprot.org/uniprot/O81650 O81650]
 
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{{#set: ec-number=ec-2.7.4.12|ec-2.7.4.9|ec-2.7.4.13}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=dtmp kinase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=7}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|genome|ecoli|plantarum}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS13425

  • transcription-direction:
    • positive
  • centisome-position:
    • 84.64709
  • left-end-position:
    • 3252991
  • right-end-position:
    • 3254076

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • HISTSYN-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-3581
    • 2 reactions found over 11 reactions in the full pathway
  • TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5048
    • 1 reactions found over 10 reactions in the full pathway
  • PWY-5886
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-8016
    • 1 reactions found over 5 reactions in the full pathway
  • PWY3O-4108
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5151
    • 1 reactions found over 2 reactions in the full pathway
  • TYRFUMCAT-PWY
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7514
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7518
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5754
    • 1 reactions found over 5 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13425&oldid=94632"