Difference between revisions of "FISUC RS15245"

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(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * common-name: ** cis-aconitate hydratase ** aconitate hydratase * direction: ** reversible == Reaction formula == * 1 [...")
(Created page with "Category:gene == Gene FISUC_RS15245 == * common-name: ** coba * transcription-direction: ** negative * centisome-position: ** 97.1894 * left-end-position: ** 3734634 *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACONITATEHYDR-RXN ==
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== Gene FISUC_RS15245 ==
 
* common-name:
 
* common-name:
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** cis-aconitate hydratase
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** coba
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** aconitate hydratase
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* transcription-direction:
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* direction:
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** negative
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** reversible
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* centisome-position:
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== Reaction formula ==
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** 97.1894   
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* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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* left-end-position:
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== Gene(s) associated with this reaction  ==
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** 3734634
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* Gene: [[FISUC_RS00920]]
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* right-end-position:
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** 3736211
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
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== Reaction(s) associated ==
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* [[RXN-13403]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS02800]]
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* [[RXN-8675]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[UROPORIIIMETHYLTRANSA-RXN]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** Category: [[annotation]]
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''4''' reactions found over '''6''' reactions in the full pathway
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== Pathway(s) associated ==
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* [[PWY-6549]], L-glutamine biosynthesis III:
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* [[PWY-7377]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** '''15''' reactions found over '''15''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle:
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* [[PWY-5194]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I:
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* [[PWY-7376]]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered):
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* [[PWY-5196]]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II:
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{{#set: common-name=coba}}
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** '''8''' reactions found over '''12''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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* [[TCA]], TCA cycle I (prokaryotic):
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{{#set: centisome-position=97.1894    }}
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** '''9''' reactions found over '''10''' reactions in the full pathway
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{{#set: left-end-position=3734634}}
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* [[PWY-7254]], TCA cycle VII (acetate-producers):
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{{#set: right-end-position=3736211}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[PWY-5690]], TCA cycle II (plants and fungi):
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{{#set: nb reaction associated=3}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb pathway associated=4}}
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* [[PWY66-398]], TCA cycle III (animals):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
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** '''9''' reactions found over '''11''' reactions in the full pathway
 
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* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[FERMENTATION-PWY]], mixed acid fermentation:
 
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** '''14''' reactions found over '''16''' reactions in the full pathway
 
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</div>
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
 
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{{#set: common-name=aconitate hydratase|cis-aconitate hydratase}}
 
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{{#set: direction=reversible}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=15}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS15245

  • common-name:
    • coba
  • transcription-direction:
    • negative
  • centisome-position:
    • 97.1894
  • left-end-position:
    • 3734634
  • right-end-position:
    • 3736211

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7377
    • 15 reactions found over 15 reactions in the full pathway
  • PWY-5194
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7376
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-5196
    • 3 reactions found over 7 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15245&oldid=94633"