Difference between revisions of "FISUC RS15245"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction KDPGALDOL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55] ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14] * d...")
(Created page with "Category:gene == Gene FISUC_RS15245 == * common-name: ** coba * transcription-direction: ** negative * centisome-position: ** 97.1894 * left-end-position: ** 3734634 *...")
 
(11 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction KDPGALDOL-RXN ==
+
== Gene FISUC_RS15245 ==
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
 
−
** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
 
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
−
** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase
+
** coba
−
== Reaction formula ==
+
* transcription-direction:
−
* 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c]
+
** negative
−
== Gene(s) associated with this reaction  ==
+
* centisome-position:
−
* Gene: [[FISUC_RS07950]]
+
** 97.1894   
 +
* left-end-position:
 +
** 3734634
 +
* right-end-position:
 +
** 3736211
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[RXN-13403]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS09880]]
+
* [[RXN-8675]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[UROPORIIIMETHYLTRANSA-RXN]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
== Pathway(s) ==
+
== Pathway(s) associated ==
−
* [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
+
* [[PWY-7377]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''15''' reactions found over '''15''' reactions in the full pathway
−
* [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
+
* [[PWY-5194]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-7310]], D-glucosaminate degradation:
+
* [[PWY-7376]]
−
** '''1''' reactions found over '''3''' reactions in the full pathway
+
** '''3''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY-7242]], D-fructuronate degradation:
+
* [[PWY-5196]]
−
** '''2''' reactions found over '''4''' reactions in the full pathway
+
** '''3''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
+
{{#set: common-name=coba}}
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
* [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
+
{{#set: centisome-position=97.1894    }}
−
** '''2''' reactions found over '''7''' reactions in the full pathway
+
{{#set: left-end-position=3734634}}
−
* [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
+
{{#set: right-end-position=3736211}}
−
** '''2''' reactions found over '''5''' reactions in the full pathway
+
{{#set: organism associated=fsucgem}}
−
== Reconstruction information  ==
+
{{#set: nb reaction associated=3}}
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
{{#set: nb pathway associated=4}}
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P44480 P44480]
 
−
** [http://www.uniprot.org/uniprot/P0A955 P0A955]
 
−
** [http://www.uniprot.org/uniprot/P00885 P00885]
 
−
** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
 
−
** [http://www.uniprot.org/uniprot/O25729 O25729]
 
−
** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
 
−
** [http://www.uniprot.org/uniprot/O83578 O83578]
 
−
** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
 
−
** [http://www.uniprot.org/uniprot/P50846 P50846]
 
−
** [http://www.uniprot.org/uniprot/P38448 P38448]
 
−
** [http://www.uniprot.org/uniprot/Q55872 Q55872]
 
−
** [http://www.uniprot.org/uniprot/P94802 P94802]
 
−
{{#set: ec-number=ec-4.1.2.14|ec-4.1.2.55}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=7}}
 
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|genome|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS15245

  • common-name:
    • coba
  • transcription-direction:
    • negative
  • centisome-position:
    • 97.1894
  • left-end-position:
    • 3734634
  • right-end-position:
    • 3736211

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7377
    • 15 reactions found over 15 reactions in the full pathway
  • PWY-5194
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7376
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-5196
    • 3 reactions found over 7 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15245&oldid=94633"