Difference between revisions of "FISUC RS15245"

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(Created page with "Category:reaction == Reaction PSERTRANSAMPYR-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52] * direction: ** reversible * common-name: ** 3-phosp...")
(Created page with "Category:gene == Gene FISUC_RS15245 == * common-name: ** coba * transcription-direction: ** negative * centisome-position: ** 97.1894 * left-end-position: ** 3734634 *...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PSERTRANSAMPYR-RXN ==
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== Gene FISUC_RS15245 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.6.1.52 ec-2.6.1.52]
 
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* direction:
 
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** reversible
 
 
* common-name:
 
* common-name:
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** 3-phosphoserine/phosphohydroxythreonine transaminase
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** coba
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== Reaction formula ==
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* transcription-direction:
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* 1 [[3OH-4P-OH-ALPHA-KETOBUTYRATE]][c] '''+''' 1 [[GLT]][c] '''<=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[4-PHOSPHONOOXY-THREONINE]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FSU_RS04780]]
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** 97.1894   
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* left-end-position:
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** 3734634
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* right-end-position:
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** 3736211
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[RXN-13403]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-8675]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS02890]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[UROPORIIIMETHYLTRANSA-RXN]]
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* [[PYRIDOXSYN-PWY]], pyridoxal 5'-phosphate biosynthesis I:
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** Category: [[annotation]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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== Pathway(s) associated ==
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-7377]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''15''' reactions found over '''15''' reactions in the full pathway
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5194]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-7376]]
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== External links  ==
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* RHEA:
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* [[PWY-5196]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16576 16576]
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* LIGAND-RXN:
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{{#set: common-name=coba}}
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** [http://www.genome.jp/dbget-bin/www_bget?R05085 R05085]
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{{#set: transcription-direction=negative}}
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{{#set: ec-number=ec-2.6.1.52}}
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{{#set: centisome-position=97.1894    }}
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{{#set: direction=reversible}}
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{{#set: left-end-position=3734634}}
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{{#set: common-name=3-phosphoserine/phosphohydroxythreonine transaminase}}
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{{#set: right-end-position=3736211}}
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{{#set: nb gene associated=2}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb pathway associated=1}}
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{{#set: nb reaction associated=3}}
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{{#set: reconstruction category=annotation|orthology}}
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{{#set: nb pathway associated=4}}
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|genome|faecalibacterium|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS15245

  • common-name:
    • coba
  • transcription-direction:
    • negative
  • centisome-position:
    • 97.1894
  • left-end-position:
    • 3734634
  • right-end-position:
    • 3736211

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7377
    • 15 reactions found over 15 reactions in the full pathway
  • PWY-5194
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7376
    • 3 reactions found over 13 reactions in the full pathway
  • PWY-5196
    • 3 reactions found over 7 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS15245&oldid=94633"