Difference between revisions of "FISUC RS06230"

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(Created page with "Category:reaction == Reaction ACONITATEHYDR-RXN == * common-name: ** cis-aconitate hydratase ** aconitate hydratase * direction: ** reversible == Reaction formula == * 1 [...")
(Created page with "Category:gene == Gene FISUC_RS06230 == * transcription-direction: ** positive * centisome-position: ** 40.146305 * left-end-position: ** 1542676 * right-end-position:...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ACONITATEHYDR-RXN ==
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== Gene FISUC_RS06230 ==
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* common-name:
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* transcription-direction:
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** cis-aconitate hydratase
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** positive
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** aconitate hydratase
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* centisome-position:
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* direction:
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** 40.146305   
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** reversible
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* left-end-position:
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== Reaction formula ==
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** 1542676
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* 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c] '''<=>''' 1 [[THREO-DS-ISO-CITRATE]][c]
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* right-end-position:
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== Gene(s) associated with this reaction  ==
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** 1546068
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* Gene: [[FISUC_RS00920]]
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[2.4.1.129-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11291]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11301]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11348]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-11350]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14712]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS02800]]
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* [[RXN-15521]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN-16650]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** Category: [[annotation]]
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* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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</div>
 +
== Pathway(s) associated ==
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* [[PWY-6385]]
 
** '''4''' reactions found over '''6''' reactions in the full pathway
 
** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6549]], L-glutamine biosynthesis III:
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* [[PWY-5265]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6728]], methylaspartate cycle:
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* [[PWY-6470]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[P23-PWY]], reductive TCA cycle I:
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* [[PWY-6471]]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-7124]], ethylene biosynthesis V (engineered):
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* [[PWY0-1586]]
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** '''7''' reactions found over '''8''' reactions in the full pathway
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** '''4''' reactions found over '''12''' reactions in the full pathway
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* [[PWY-5392]], reductive TCA cycle II:
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{{#set: transcription-direction=positive}}
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** '''8''' reactions found over '''12''' reactions in the full pathway
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{{#set: centisome-position=40.146305    }}
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* [[TCA]], TCA cycle I (prokaryotic):
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{{#set: left-end-position=1542676}}
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** '''9''' reactions found over '''10''' reactions in the full pathway
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{{#set: right-end-position=1546068}}
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* [[PWY-7254]], TCA cycle VII (acetate-producers):
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{{#set: organism associated=fsucgem}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: nb reaction associated=8}}
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* [[PWY-5690]], TCA cycle II (plants and fungi):
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{{#set: nb pathway associated=5}}
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** '''8''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY66-398]], TCA cycle III (animals):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
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** '''9''' reactions found over '''11''' reactions in the full pathway
 
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* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
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** '''9''' reactions found over '''12''' reactions in the full pathway
 
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* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
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** '''8''' reactions found over '''11''' reactions in the full pathway
 
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* [[FERMENTATION-PWY]], mixed acid fermentation:
 
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** '''14''' reactions found over '''16''' reactions in the full pathway
 
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</div>
 
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== Reconstruction information  ==
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22147 22147]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01900 R01900]
 
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{{#set: common-name=cis-aconitate hydratase|aconitate hydratase}}
 
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{{#set: direction=reversible}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=15}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS06230

  • transcription-direction:
    • positive
  • centisome-position:
    • 40.146305
  • left-end-position:
    • 1542676
  • right-end-position:
    • 1546068

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6385
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5265
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6470
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6471
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-1586
    • 4 reactions found over 12 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS06230&oldid=94636"