Difference between revisions of "FISUC RS06230"

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(Created page with "Category:reaction == Reaction GARTRANSFORMYL2-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.1.2 ec-2.1.2] * direction: ** left-to-right == Reaction formula == * 1...")
(Created page with "Category:gene == Gene FISUC_RS06230 == * transcription-direction: ** positive * centisome-position: ** 40.146305 * left-end-position: ** 1542676 * right-end-position:...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction GARTRANSFORMYL2-RXN ==
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== Gene FISUC_RS06230 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.1.2 ec-2.1.2]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 40.146305   
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== Reaction formula ==
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* left-end-position:
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* 1 [[5-PHOSPHO-RIBOSYL-GLYCINEAMIDE]][c] '''+''' 1 [[ATP]][c] '''+''' 1 [[FORMATE]][c] '''=>''' 1 [[5-P-RIBOSYL-N-FORMYLGLYCINEAMIDE]][c] '''+''' 1 [[ADP]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[Pi]][c]
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** 1542676
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FSU_RS04650]]
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** 1546068
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** Category: [[orthology]]
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== Organism(s) associated with this gene  ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fsucgem]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Reaction(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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== Pathway(s)  ==
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* [[2.4.1.129-RXN]]
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* [[PWY-6277]], superpathway of 5-aminoimidazole ribonucleotide biosynthesis:
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** Category: [[annotation]]
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** '''7''' reactions found over '''5''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6122]], 5-aminoimidazole ribonucleotide biosynthesis II:
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* [[RXN-11291]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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== Reconstruction information  ==
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[RXN-11301]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[annotation]]
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* [[RXN-11348]]
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* RHEA:
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** Category: [[annotation]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24830 24830]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* LIGAND-RXN:
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* [[RXN-11350]]
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** [http://www.genome.jp/dbget-bin/www_bget?R06974 R06974]
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** Category: [[annotation]]
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{{#set: ec-number=ec-2.1.2}}
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: direction=left-to-right}}
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* [[RXN-14712]]
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{{#set: nb gene associated=1}}
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** Category: [[annotation]]
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{{#set: nb pathway associated=2}}
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction category=orthology}}
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* [[RXN-15521]]
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{{#set: reconstruction tool=orthofinder}}
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** Category: [[annotation]]
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{{#set: reconstruction comment=n.a}}
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction source=ecoli|bthetaiotaomicron|bifidobacterium}}
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* [[RXN-16650]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-6385]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5265]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6470]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6471]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY0-1586]]
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** '''4''' reactions found over '''12''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: centisome-position=40.146305    }}
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{{#set: left-end-position=1542676}}
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{{#set: right-end-position=1546068}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=8}}
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{{#set: nb pathway associated=5}}

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS06230

  • transcription-direction:
    • positive
  • centisome-position:
    • 40.146305
  • left-end-position:
    • 1542676
  • right-end-position:
    • 1546068

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6385
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5265
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6470
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6471
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-1586
    • 4 reactions found over 12 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS06230&oldid=94636"