Difference between revisions of "FSU RS13560"

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(Created page with "Category:reaction == Reaction 6PGLUCONDEHYDROG-RXN == * common-name: ** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating] * ec-number: ** [http://enzyme....")
(Created page with "Category:gene == Gene FSU_RS13560 == * common-name: ** quef * transcription-direction: ** positive * centisome-position: ** 85.547035 * left-end-position: ** 3287576 *...")
 
(10 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 6PGLUCONDEHYDROG-RXN ==
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== Gene FSU_RS13560 ==
 
* common-name:
 
* common-name:
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** phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]
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** quef
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/1.1.1.351 ec-1.1.1.351]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 85.547035   
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* synonymous:
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* left-end-position:
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** 6-phosphogluconic carboxylase
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** 3287576
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** 6-phosphogluconic dehydrogenase
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* right-end-position:
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** phosphogluconic acid dehydrogenase
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** 3288052
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** 6pgd
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== Organism(s) associated with this gene ==
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== Reaction formula ==
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* [[fsucgem]]
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* 1 [[CPD-2961]][c] '''+''' 1 [[NAD-P-OR-NOP]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[NADH-P-OR-NOP]][c] '''+''' 1 [[RIBULOSE-5P]][c]
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== Reaction(s) associated ==
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== Gene(s) associated with this reaction  ==
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* [[RXN0-4022]]
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== Pathway(s) ==
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** Category: [[annotation]]
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* [[P122-PWY]], heterolactic fermentation:
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** '''17''' reactions found over '''18''' reactions in the full pathway
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** Category: [[orthology]]
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== Reconstruction information  ==
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* category: [[manual]]; source: [[reactions_add_ibrahim_26082020]]; tool: [[curation]]; comment: added to improve flux in sugars
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== Pathway(s) associated ==
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== External links  ==
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* [[PWY-6700]]
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* RHEA:
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{{#set: common-name=quef}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10117 10117]
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{{#set: transcription-direction=positive}}
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* UNIPROT:
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{{#set: centisome-position=85.547035    }}
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** [http://www.uniprot.org/uniprot/P14332 P14332]
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{{#set: left-end-position=3287576}}
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** [http://www.uniprot.org/uniprot/P31072 P31072]
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{{#set: right-end-position=3288052}}
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** [http://www.uniprot.org/uniprot/Q9CDN4 Q9CDN4]
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{{#set: organism associated=fsucgem}}
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** [http://www.uniprot.org/uniprot/P47506 P47506]
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{{#set: nb reaction associated=1}}
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** [http://www.uniprot.org/uniprot/Q9JWS3 Q9JWS3]
 
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** [http://www.uniprot.org/uniprot/P43774 P43774]
 
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** [http://www.uniprot.org/uniprot/P12013 P12013]
 
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** [http://www.uniprot.org/uniprot/P41576 P41576]
 
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** [http://www.uniprot.org/uniprot/P00350 P00350]
 
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** [http://www.uniprot.org/uniprot/P00349 P00349]
 
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** [http://www.uniprot.org/uniprot/P52209 P52209]
 
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** [http://www.uniprot.org/uniprot/P41581 P41581]
 
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** [http://www.uniprot.org/uniprot/P41582 P41582]
 
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** [http://www.uniprot.org/uniprot/Q59275 Q59275]
 
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** [http://www.uniprot.org/uniprot/P41583 P41583]
 
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** [http://www.uniprot.org/uniprot/Q60254 Q60254]
 
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** [http://www.uniprot.org/uniprot/P37754 P37754]
 
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** [http://www.uniprot.org/uniprot/Q59410 Q59410]
 
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** [http://www.uniprot.org/uniprot/P52207 P52207]
 
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** [http://www.uniprot.org/uniprot/P70718 P70718]
 
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** [http://www.uniprot.org/uniprot/Q7M451 Q7M451]
 
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** [http://www.uniprot.org/uniprot/P41572 P41572]
 
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** [http://www.uniprot.org/uniprot/P14062 P14062]
 
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** [http://www.uniprot.org/uniprot/P21577 P21577]
 
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** [http://www.uniprot.org/uniprot/P38720 P38720]
 
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** [http://www.uniprot.org/uniprot/Q40311 Q40311]
 
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** [http://www.uniprot.org/uniprot/P53319 P53319]
 
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** [http://www.uniprot.org/uniprot/O81237 O81237]
 
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** [http://www.uniprot.org/uniprot/O81238 O81238]
 
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** [http://www.uniprot.org/uniprot/O81239 O81239]
 
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** [http://www.uniprot.org/uniprot/O22111 O22111]
 
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** [http://www.uniprot.org/uniprot/Q17761 Q17761]
 
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** [http://www.uniprot.org/uniprot/O32911 O32911]
 
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</div>
 
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{{#set: common-name=phosphogluconate dehydrogenase [nad(p)+-dependent, decarboxylating]}}
 
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{{#set: ec-number=ec-1.1.1.351}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: synonymous=6pgd|6-phosphogluconic carboxylase|6-phosphogluconic dehydrogenase|phosphogluconic acid dehydrogenase}}
 
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{{#set: nb gene associated=0}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=manual}}
 
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{{#set: reconstruction tool=curation}}
 
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{{#set: reconstruction comment=added to improve flux in sugars}}
 
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{{#set: reconstruction source=reactions_add_ibrahim_26082020}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS13560

  • common-name:
    • quef
  • transcription-direction:
    • positive
  • centisome-position:
    • 85.547035
  • left-end-position:
    • 3287576
  • right-end-position:
    • 3288052

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6700
    • 4 reactions found over 4 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS13560&oldid=94637"