Difference between revisions of "FSU RS00725"

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(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2] * direction: ** left-to-right == Reaction for...")
(Created page with "Category:gene == Gene FSU_RS00725 == * transcription-direction: ** negative * centisome-position: ** 4.459298 * left-end-position: ** 171371 * right-end-position: ** 1...")
 
(12 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
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== Gene FSU_RS00725 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 4.459298   
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== Reaction formula ==
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* left-end-position:
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* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** 171371
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FSU_RS00325]]
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** 172369
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[F16ALDOLASE-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-8631]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[SEDOBISALDOL-RXN]]
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s)  ==
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5022]], 4-aminobutanoate degradation V:
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''1''' reactions found over '''7''' reactions in the full pathway
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== Pathway(s) associated ==
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* [[PWY-7126]], ethylene biosynthesis IV (engineered):
 
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** '''1''' reactions found over '''3''' reactions in the full pathway
 
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* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
 
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** '''1''' reactions found over '''11''' reactions in the full pathway
 
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* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
 
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** '''1''' reactions found over '''1''' reactions in the full pathway
 
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* [[PWY-6728]], methylaspartate cycle:
 
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** '''9''' reactions found over '''19''' reactions in the full pathway
 
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* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
 
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** '''3''' reactions found over '''3''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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* [[PWY-1861]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* LIGAND-RXN:
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* [[P185-PWY]]
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** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
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** '''10''' reactions found over '''12''' reactions in the full pathway
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* UNIPROT:
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* [[PWY-1042]]
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** [http://www.uniprot.org/uniprot/P20016 P20016]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P28997 P28997]
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* [[SUCSYN-PWY]]
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** [http://www.uniprot.org/uniprot/P41755 P41755]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
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* [[ANAGLYCOLYSIS-PWY]]
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** [http://www.uniprot.org/uniprot/P00365 P00365]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P93541 P93541]
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* [[CALVIN-PWY]]
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** [http://www.uniprot.org/uniprot/P80319 P80319]
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** '''11''' reactions found over '''13''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P24295 P24295]
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* [[GLYCOLYSIS]]
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** [http://www.uniprot.org/uniprot/P27346 P27346]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P33327 P33327]
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* [[PWY66-399]]
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** [http://www.uniprot.org/uniprot/Q43260 Q43260]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/O04937 O04937]
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* [[P341-PWY]]
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** [http://www.uniprot.org/uniprot/Q25415 Q25415]
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** '''6''' reactions found over '''10''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/O74024 O74024]
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* [[GLUCONEO-PWY]]
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** [http://www.uniprot.org/uniprot/O59650 O59650]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-6142]]
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** '''10''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-5484]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7385]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY66-373]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[PWY0-1517]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
 
</div>
 
</div>
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{{#set: ec-number=ec-1.4.1.2}}
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{{#set: transcription-direction=negative}}
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{{#set: direction=left-to-right}}
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{{#set: centisome-position=4.459298    }}
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{{#set: nb gene associated=1}}
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{{#set: left-end-position=171371}}
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{{#set: nb pathway associated=6}}
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{{#set: right-end-position=172369}}
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{{#set: reconstruction category=orthology}}
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{{#set: organism associated=fsucgem}}
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{{#set: reconstruction tool=orthofinder}}
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{{#set: nb reaction associated=3}}
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{{#set: reconstruction comment=n.a}}
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{{#set: nb pathway associated=15}}
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{{#set: reconstruction source=bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS00725

  • transcription-direction:
    • negative
  • centisome-position:
    • 4.459298
  • left-end-position:
    • 171371
  • right-end-position:
    • 172369

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-1861
    • 9 reactions found over 9 reactions in the full pathway
  • P185-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-1042
    • 8 reactions found over 10 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • CALVIN-PWY
    • 11 reactions found over 13 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7385
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-373
    • 2 reactions found over 5 reactions in the full pathway
  • PWY0-1517
    • 2 reactions found over 2 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS00725&oldid=94642"