Difference between revisions of "FSU RS00725"

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(Created page with "Category:reaction == Reaction HOMOSERKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.1.39 ec-2.7.1.39] * direction: ** left-to-right == Reaction formula == * 1...")
(Created page with "Category:gene == Gene FSU_RS00725 == * transcription-direction: ** negative * centisome-position: ** 4.459298 * left-end-position: ** 171371 * right-end-position: ** 1...")
 
(9 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction HOMOSERKIN-RXN ==
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== Gene FSU_RS00725 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.1.39 ec-2.7.1.39]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 4.459298   
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== Reaction formula ==
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* left-end-position:
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* 1 [[ATP]][c] '''+''' 1 [[HOMO-SER]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[O-PHOSPHO-L-HOMOSERINE]][c] '''+''' 1 [[PROTON]][c]
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** 171371
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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== Pathway(s)  ==
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** 172369
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* [[HOMOSER-THRESYN-PWY]], L-threonine biosynthesis:
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== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
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== Reaction(s) associated ==
 +
* [[F16ALDOLASE-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-8631]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[SEDOBISALDOL-RXN]]
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** Category: [[orthology]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-1861]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[P185-PWY]]
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** '''10''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY-1042]]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[SUCSYN-PWY]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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* [[ANAGLYCOLYSIS-PWY]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
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* [[CALVIN-PWY]]
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** '''11''' reactions found over '''13''' reactions in the full pathway
 +
* [[GLYCOLYSIS]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[PWY66-399]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P341-PWY]]
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** '''6''' reactions found over '''10''' reactions in the full pathway
 +
* [[GLUCONEO-PWY]]
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** '''13''' reactions found over '''13''' reactions in the full pathway
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* [[PWY-6142]]
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** '''10''' reactions found over '''13''' reactions in the full pathway
 +
* [[PWY-5484]]
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** '''10''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-7385]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY66-373]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY0-1517]]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-702]], L-methionine biosynthesis II (plants):
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</div>
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** '''5''' reactions found over '''6''' reactions in the full pathway
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{{#set: transcription-direction=negative}}
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== Reconstruction information  ==
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{{#set: centisome-position=4.459298    }}
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* category: [[manual]]; source: [[reactions_add_gp]]; tool: [[curation]]; comment: added for gap-filling
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{{#set: left-end-position=171371}}
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== External links  ==
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{{#set: right-end-position=172369}}
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* RHEA:
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{{#set: organism associated=fsucgem}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13985 13985]
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{{#set: nb reaction associated=3}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=15}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01771 R01771]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P27722 P27722]
 
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** [http://www.uniprot.org/uniprot/Q9PIZ3 Q9PIZ3]
 
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** [http://www.uniprot.org/uniprot/P04948 P04948]
 
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** [http://www.uniprot.org/uniprot/Q9UZV7 Q9UZV7]
 
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** [http://www.uniprot.org/uniprot/Q9CGD7 Q9CGD7]
 
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** [http://www.uniprot.org/uniprot/P44504 P44504]
 
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** [http://www.uniprot.org/uniprot/P52991 P52991]
 
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** [http://www.uniprot.org/uniprot/P00547 P00547]
 
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** [http://www.uniprot.org/uniprot/P07128 P07128]
 
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** [http://www.uniprot.org/uniprot/P17423 P17423]
 
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** [http://www.uniprot.org/uniprot/P73646 P73646]
 
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{{#set: ec-number=ec-2.7.1.39}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=0}}
 
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{{#set: nb pathway associated=2}}
 
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{{#set: reconstruction category=manual}}
 
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{{#set: reconstruction tool=curation}}
 
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{{#set: reconstruction comment=added for gap-filling}}
 
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{{#set: reconstruction source=reactions_add_gp}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS00725

  • transcription-direction:
    • negative
  • centisome-position:
    • 4.459298
  • left-end-position:
    • 171371
  • right-end-position:
    • 172369

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-1861
    • 9 reactions found over 9 reactions in the full pathway
  • P185-PWY
    • 10 reactions found over 12 reactions in the full pathway
  • PWY-1042
    • 8 reactions found over 10 reactions in the full pathway
  • SUCSYN-PWY
    • 6 reactions found over 7 reactions in the full pathway
  • ANAGLYCOLYSIS-PWY
    • 10 reactions found over 11 reactions in the full pathway
  • CALVIN-PWY
    • 11 reactions found over 13 reactions in the full pathway
  • GLYCOLYSIS
    • 11 reactions found over 12 reactions in the full pathway
  • PWY66-399
    • 11 reactions found over 12 reactions in the full pathway
  • P341-PWY
    • 6 reactions found over 10 reactions in the full pathway
  • GLUCONEO-PWY
    • 13 reactions found over 13 reactions in the full pathway
  • PWY-6142
    • 10 reactions found over 13 reactions in the full pathway
  • PWY-5484
    • 10 reactions found over 11 reactions in the full pathway
  • PWY-7385
    • 5 reactions found over 9 reactions in the full pathway
  • PWY66-373
    • 2 reactions found over 5 reactions in the full pathway
  • PWY0-1517
    • 2 reactions found over 2 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS00725&oldid=94642"