Difference between revisions of "FSU RS00725"
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(Created page with "Category:reaction == Reaction RXN-19344 == * direction: ** left-to-right == Reaction formula == * 1 CPD-689[c] '''+''' 1 Corrinoid-Adenosyltransferases[c] '''=>'''...") |
(Created page with "Category:gene == Gene FSU_RS00725 == * transcription-direction: ** negative * centisome-position: ** 4.459298 * left-end-position: ** 171371 * right-end-position: ** 1...") |
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− | [[Category: | + | [[Category:gene]] |
− | == | + | == Gene FSU_RS00725 == |
− | * direction: | + | * transcription-direction: |
− | ** left- | + | ** negative |
− | == Reaction | + | * centisome-position: |
− | * | + | ** 4.459298 |
− | == | + | * left-end-position: |
− | == | + | ** 171371 |
− | * [[PWY- | + | * right-end-position: |
− | ** '''6''' reactions found over '''6''' reactions in the full pathway | + | ** 172369 |
− | + | == Organism(s) associated with this gene == | |
− | * | + | * [[fsucgem]] |
− | + | == Reaction(s) associated == | |
− | {{#set: direction= | + | * [[F16ALDOLASE-RXN]] |
− | {{#set: | + | ** Category: [[annotation]] |
− | {{#set: | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
− | {{#set: | + | * [[RXN-8631]] |
− | {{#set: | + | ** Category: [[manual]] |
− | {{#set: | + | *** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars |
− | {{#set: | + | * [[SEDOBISALDOL-RXN]] |
+ | ** Category: [[orthology]] | ||
+ | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
+ | *** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
+ | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
+ | == Pathway(s) associated == | ||
+ | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
+ | * [[PWY-1861]] | ||
+ | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[P185-PWY]] | ||
+ | ** '''10''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY-1042]] | ||
+ | ** '''8''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[SUCSYN-PWY]] | ||
+ | ** '''6''' reactions found over '''7''' reactions in the full pathway | ||
+ | * [[ANAGLYCOLYSIS-PWY]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[CALVIN-PWY]] | ||
+ | ** '''11''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[GLYCOLYSIS]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[PWY66-399]] | ||
+ | ** '''11''' reactions found over '''12''' reactions in the full pathway | ||
+ | * [[P341-PWY]] | ||
+ | ** '''6''' reactions found over '''10''' reactions in the full pathway | ||
+ | * [[GLUCONEO-PWY]] | ||
+ | ** '''13''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-6142]] | ||
+ | ** '''10''' reactions found over '''13''' reactions in the full pathway | ||
+ | * [[PWY-5484]] | ||
+ | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
+ | * [[PWY-7385]] | ||
+ | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY66-373]] | ||
+ | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
+ | * [[PWY0-1517]] | ||
+ | ** '''2''' reactions found over '''2''' reactions in the full pathway | ||
+ | </div> | ||
+ | {{#set: transcription-direction=negative}} | ||
+ | {{#set: centisome-position=4.459298 }} | ||
+ | {{#set: left-end-position=171371}} | ||
+ | {{#set: right-end-position=172369}} | ||
+ | {{#set: organism associated=fsucgem}} | ||
+ | {{#set: nb reaction associated=3}} | ||
+ | {{#set: nb pathway associated=15}} |
Latest revision as of 11:21, 17 October 2022
Contents
Gene FSU_RS00725
- transcription-direction:
- negative
- centisome-position:
- 4.459298
- left-end-position:
- 171371
- right-end-position:
- 172369
Organism(s) associated with this gene
Reaction(s) associated
- F16ALDOLASE-RXN
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-8631
- Category: manual
- source: add_expert_reactions; tool: unknown-tool; comment: added to improve flux in sugars
- Category: manual
- SEDOBISALDOL-RXN
- Category: orthology
- source: ecoli; tool: orthofinder; comment: n.a
- source: faecalibacterium; tool: orthofinder; comment: n.a
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-1861
- 9 reactions found over 9 reactions in the full pathway
- P185-PWY
- 10 reactions found over 12 reactions in the full pathway
- PWY-1042
- 8 reactions found over 10 reactions in the full pathway
- SUCSYN-PWY
- 6 reactions found over 7 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- CALVIN-PWY
- 11 reactions found over 13 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- P341-PWY
- 6 reactions found over 10 reactions in the full pathway
- GLUCONEO-PWY
- 13 reactions found over 13 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- PWY-7385
- 5 reactions found over 9 reactions in the full pathway
- PWY66-373
- 2 reactions found over 5 reactions in the full pathway
- PWY0-1517
- 2 reactions found over 2 reactions in the full pathway