Difference between revisions of "FSU RS00725"
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(Created page with "Category:gene == Gene FSU_RS00725 == * transcription-direction: ** negative * centisome-position: ** 4.459298 * left-end-position: ** 171371 * right-end-position: ** 1...") |
(Created page with "Category:gene == Gene FSU_RS00725 == * transcription-direction: ** negative * centisome-position: ** 4.459298 * left-end-position: ** 171371 * right-end-position: ** 1...") |
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| (2 intermediate revisions by the same user not shown) | |||
| Line 10: | Line 10: | ||
** 172369 | ** 172369 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
| − | * [[ | + | * [[fsucgem]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
* [[F16ALDOLASE-RXN]] | * [[F16ALDOLASE-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
| − | *** source: [[ | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
* [[RXN-8631]] | * [[RXN-8631]] | ||
** Category: [[manual]] | ** Category: [[manual]] | ||
| − | *** source: [[ | + | *** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars |
* [[SEDOBISALDOL-RXN]] | * [[SEDOBISALDOL-RXN]] | ||
** Category: [[orthology]] | ** Category: [[orthology]] | ||
| + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a | ||
| + | *** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
| − | |||
| − | |||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
| − | |||
| − | |||
* [[PWY-1861]] | * [[PWY-1861]] | ||
** '''9''' reactions found over '''9''' reactions in the full pathway | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
| Line 51: | Line 49: | ||
* [[PWY-5484]] | * [[PWY-5484]] | ||
** '''10''' reactions found over '''11''' reactions in the full pathway | ** '''10''' reactions found over '''11''' reactions in the full pathway | ||
| + | * [[PWY-7385]] | ||
| + | ** '''5''' reactions found over '''9''' reactions in the full pathway | ||
* [[PWY66-373]] | * [[PWY66-373]] | ||
** '''2''' reactions found over '''5''' reactions in the full pathway | ** '''2''' reactions found over '''5''' reactions in the full pathway | ||
| Line 60: | Line 60: | ||
{{#set: left-end-position=171371}} | {{#set: left-end-position=171371}} | ||
{{#set: right-end-position=172369}} | {{#set: right-end-position=172369}} | ||
| − | {{#set: organism associated= | + | {{#set: organism associated=fsucgem}} |
{{#set: nb reaction associated=3}} | {{#set: nb reaction associated=3}} | ||
{{#set: nb pathway associated=15}} | {{#set: nb pathway associated=15}} | ||
Latest revision as of 11:21, 17 October 2022
Contents
Gene FSU_RS00725
- transcription-direction:
- negative
- centisome-position:
- 4.459298
- left-end-position:
- 171371
- right-end-position:
- 172369
Organism(s) associated with this gene
Reaction(s) associated
- F16ALDOLASE-RXN
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-8631
- Category: manual
- source: add_expert_reactions; tool: unknown-tool; comment: added to improve flux in sugars
- Category: manual
- SEDOBISALDOL-RXN
- Category: orthology
- source: ecoli; tool: orthofinder; comment: n.a
- source: faecalibacterium; tool: orthofinder; comment: n.a
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- Category: orthology
Pathway(s) associated
- PWY-1861
- 9 reactions found over 9 reactions in the full pathway
- P185-PWY
- 10 reactions found over 12 reactions in the full pathway
- PWY-1042
- 8 reactions found over 10 reactions in the full pathway
- SUCSYN-PWY
- 6 reactions found over 7 reactions in the full pathway
- ANAGLYCOLYSIS-PWY
- 10 reactions found over 11 reactions in the full pathway
- CALVIN-PWY
- 11 reactions found over 13 reactions in the full pathway
- GLYCOLYSIS
- 11 reactions found over 12 reactions in the full pathway
- PWY66-399
- 11 reactions found over 12 reactions in the full pathway
- P341-PWY
- 6 reactions found over 10 reactions in the full pathway
- GLUCONEO-PWY
- 13 reactions found over 13 reactions in the full pathway
- PWY-6142
- 10 reactions found over 13 reactions in the full pathway
- PWY-5484
- 10 reactions found over 11 reactions in the full pathway
- PWY-7385
- 5 reactions found over 9 reactions in the full pathway
- PWY66-373
- 2 reactions found over 5 reactions in the full pathway
- PWY0-1517
- 2 reactions found over 2 reactions in the full pathway
