Difference between revisions of "FISUC RS05190"

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(Created page with "Category:reaction == Reaction KETOBUTFORMLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:gene == Gene FISUC_RS05190 == * common-name: ** alas * transcription-direction: ** negative * centisome-position: ** 33.34488 * left-end-position: ** 1281322...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction KETOBUTFORMLY-RXN ==
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== Gene FISUC_RS05190 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
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** alas
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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== Reaction formula ==
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* centisome-position:
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* 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROPIONYL-COA]][c]
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** 33.34488   
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== Gene(s) associated with this reaction ==
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* left-end-position:
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* Gene: [[FSU_RS07120]]
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** 1281322
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** Category: [[orthology]]
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* right-end-position:
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** 1283970
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Organism(s) associated with this gene ==
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* Gene: [[FSU_RS07105]]
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* [[fsucgem]]
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** Category: [[orthology]]
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== Reaction(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[ALANINE--TRNA-LIGASE-RXN]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Pathway(s) associated ==
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== Pathway(s) ==
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* [[TRNA-CHARGING-PWY]]
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* [[PWY-5437]], L-threonine degradation I:
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** '''21''' reactions found over '''21''' reactions in the full pathway
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** '''3''' reactions found over '''6''' reactions in the full pathway
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{{#set: common-name=alas}}
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== Reconstruction information  ==
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{{#set: transcription-direction=negative}}
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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{{#set: centisome-position=33.34488    }}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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{{#set: left-end-position=1281322}}
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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{{#set: right-end-position=1283970}}
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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{{#set: organism associated=fsucgem}}
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== External links  ==
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{{#set: nb reaction associated=1}}
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28055 28055]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R06987 R06987]
 
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{{#set: ec-number=ec-2.3.1}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=1}}
 
{{#set: nb pathway associated=1}}
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|ecoli|bthetaiotaomicron|faecalibacterium}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS05190

  • common-name:
    • alas
  • transcription-direction:
    • negative
  • centisome-position:
    • 33.34488
  • left-end-position:
    • 1281322
  • right-end-position:
    • 1283970

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS05190&oldid=94653"