Difference between revisions of "FSU RS12885"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction KETOBUTFORMLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:gene == Gene FSU_RS12885 == * common-name: ** nada * transcription-direction: ** negative * centisome-position: ** 81.49635 * left-end-position: ** 3131908 *...")
 
(6 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction KETOBUTFORMLY-RXN ==
+
== Gene FSU_RS12885 ==
−
* ec-number:
+
* common-name:
−
** [http://enzyme.expasy.org/EC/2.3.1 ec-2.3.1]
+
** nada
−
* direction:
+
* transcription-direction:
−
** left-to-right
+
** negative
−
== Reaction formula ==
+
* centisome-position:
−
* 1 [[2-OXOBUTANOATE]][c] '''+''' 1 [[CO-A]][c] '''=>''' 1 [[FORMATE]][c] '''+''' 1 [[PROPIONYL-COA]][c]
+
** 81.49635   
−
== Gene(s) associated with this reaction  ==
+
* left-end-position:
−
* Gene: [[FSU_RS07120]]
+
** 3131908
 +
* right-end-position:
 +
** 3132921
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[QUINOLINATE-SYNTHA-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
−
* Gene: [[FSU_RS07105]]
+
== Pathway(s) associated ==
−
** Category: [[orthology]]
+
* [[PWY-7342]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** '''3''' reactions found over '''9''' reactions in the full pathway
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[PWY-5316]]
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** '''2''' reactions found over '''9''' reactions in the full pathway
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[PYRIDNUCSYN-PWY]]
−
== Pathway(s) ==
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-5437]], L-threonine degradation I:
+
{{#set: common-name=nada}}
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
{{#set: transcription-direction=negative}}
−
== Reconstruction information  ==
+
{{#set: centisome-position=81.49635    }}
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
+
{{#set: left-end-position=3131908}}
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
{{#set: right-end-position=3132921}}
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
{{#set: organism associated=fsucgem}}
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
{{#set: nb reaction associated=1}}
−
== External links  ==
+
{{#set: nb pathway associated=3}}
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28055 28055]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R06987 R06987]
 
−
{{#set: ec-number=ec-2.3.1}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: nb gene associated=2}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=orthology}}
 
−
{{#set: reconstruction tool=orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bifidobacterium|ecoli|bthetaiotaomicron|faecalibacterium}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS12885

  • common-name:
    • nada
  • transcription-direction:
    • negative
  • centisome-position:
    • 81.49635
  • left-end-position:
    • 3131908
  • right-end-position:
    • 3132921

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7342
    • 3 reactions found over 9 reactions in the full pathway
  • PWY-5316
    • 2 reactions found over 9 reactions in the full pathway
  • PYRIDNUCSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS12885&oldid=94655"