Difference between revisions of "FSU RS12885"

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(Created page with "Category:reaction == Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50] * direction: ** left-to-right == Reac...")
(Created page with "Category:gene == Gene FSU_RS12885 == * common-name: ** nada * transcription-direction: ** negative * centisome-position: ** 81.49635 * left-end-position: ** 3131908 *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction SERINE-C-PALMITOYLTRANSFERASE-RXN ==
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== Gene FSU_RS12885 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/2.3.1.50 ec-2.3.1.50]
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** nada
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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== Reaction formula ==
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* centisome-position:
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* 1 [[PALMITYL-COA]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[DEHYDROSPHINGANINE]][c]
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** 81.49635   
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== Gene(s) associated with this reaction  ==
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* left-end-position:
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* Gene: [[FSU_RS01045]]
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** 3131908
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* right-end-position:
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** 3132921
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[QUINOLINATE-SYNTHA-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s) ==
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY3DJ-12]], ceramide de novo biosynthesis:
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== Pathway(s) associated ==
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7342]]
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* [[SPHINGOLIPID-SYN-PWY]], sphingolipid biosynthesis (yeast):
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** '''3''' reactions found over '''9''' reactions in the full pathway
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** '''1''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-5316]]
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* [[PWY-5129]], sphingolipid biosynthesis (plants):
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** '''2''' reactions found over '''9''' reactions in the full pathway
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** '''1''' reactions found over '''13''' reactions in the full pathway
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* [[PYRIDNUCSYN-PWY]]
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== Reconstruction information  ==
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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{{#set: common-name=nada}}
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== External links  ==
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{{#set: transcription-direction=negative}}
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* RHEA:
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{{#set: centisome-position=81.49635    }}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14762 14762]
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{{#set: left-end-position=3131908}}
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* LIGAND-RXN:
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{{#set: right-end-position=3132921}}
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** [http://www.genome.jp/dbget-bin/www_bget?R01281 R01281]
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{{#set: organism associated=fsucgem}}
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* UNIPROT:
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{{#set: nb reaction associated=1}}
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** [http://www.uniprot.org/uniprot/P25045 P25045]
 
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** [http://www.uniprot.org/uniprot/O15270 O15270]
 
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** [http://www.uniprot.org/uniprot/P48241 P48241]
 
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** [http://www.uniprot.org/uniprot/Q09925 Q09925]
 
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** [http://www.uniprot.org/uniprot/P40970 P40970]
 
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** [http://www.uniprot.org/uniprot/Q9XVI6 Q9XVI6]
 
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** [http://www.uniprot.org/uniprot/Q20375 Q20375]
 
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** [http://www.uniprot.org/uniprot/Q9M304 Q9M304]
 
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{{#set: ec-number=ec-2.3.1.50}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=1}}
 
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS12885

  • common-name:
    • nada
  • transcription-direction:
    • negative
  • centisome-position:
    • 81.49635
  • left-end-position:
    • 3131908
  • right-end-position:
    • 3132921

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7342
    • 3 reactions found over 9 reactions in the full pathway
  • PWY-5316
    • 2 reactions found over 9 reactions in the full pathway
  • PYRIDNUCSYN-PWY
    • 5 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS12885&oldid=94655"