Difference between revisions of "FSU RS08125"

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(Created page with "Category:reaction == Reaction RXN0-2382 == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:gene == Gene FSU_RS08125 == * transcription-direction: ** positive * centisome-position: ** 51.766586 * left-end-position: ** 1989392 * right-end-position: **...")
 
(11 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN0-2382 ==
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== Gene FSU_RS08125 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 51.766586   
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== Reaction formula ==
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* left-end-position:
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* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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** 1989392
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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** 1992784
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* Gene: [[FISUC_RS00915]]
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* [[2.4.1.129-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS00910]]
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* [[RXN-11291]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS02790]]
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* [[RXN-11301]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-11348]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS02795]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-11350]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-14712]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-15521]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-16650]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
</div>
 
</div>
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== Pathway(s) ==
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== Pathway(s) associated ==
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
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* [[PWY-6385]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5265]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6470]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6471]]
 
** '''6''' reactions found over '''6''' reactions in the full pathway
 
** '''6''' reactions found over '''6''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY0-1586]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''4''' reactions found over '''12''' reactions in the full pathway
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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{{#set: transcription-direction=positive}}
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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{{#set: centisome-position=51.766586    }}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: left-end-position=1989392}}
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== External links  ==
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{{#set: right-end-position=1992784}}
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* RHEA:
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{{#set: organism associated=fsucgem}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
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{{#set: nb reaction associated=8}}
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* LIGAND-RXN:
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{{#set: nb pathway associated=5}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
 
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{{#set: ec-number=ec-4.2.1.122}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=4}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=ecoli|genome|bifidobacterium|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS08125

  • transcription-direction:
    • positive
  • centisome-position:
    • 51.766586
  • left-end-position:
    • 1989392
  • right-end-position:
    • 1992784

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6385
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5265
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6470
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6471
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-1586
    • 4 reactions found over 12 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS08125&oldid=94661"