Difference between revisions of "FSU RS08125"

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(Created page with "Category:reaction == Reaction PYRIMSYN1-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.99.17 ec-4.1.99.17] * direction: ** left-to-right * common-name: ** phospho...")
(Created page with "Category:gene == Gene FSU_RS08125 == * transcription-direction: ** positive * centisome-position: ** 51.766586 * left-end-position: ** 1989392 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PYRIMSYN1-RXN ==
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== Gene FSU_RS08125 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.1.99.17 ec-4.1.99.17]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 51.766586   
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* common-name:
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* left-end-position:
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** phosphomethylpyrimidine synthase thic
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** 1989392
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== Reaction formula ==
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* right-end-position:
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* 1 [[5-PHOSPHORIBOSYL-5-AMINOIMIDAZOLE]][c] '''+''' 1 [[S-ADENOSYLMETHIONINE]][c] '''=>''' 1 [[AMINO-HYDROXYMETHYL-METHYL-PYR-P]][c] '''+''' 1 [[CARBON-MONOXIDE]][c] '''+''' 1 [[CH33ADO]][c] '''+''' 1 [[FORMATE]][c] '''+''' 1 [[MET]][c] '''+''' 3 [[PROTON]][c]
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** 1992784
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS04020]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[2.4.1.129-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS02135]]
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* [[RXN-11291]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN-11301]]
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* [[PWY-6890]], 4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis:
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** Category: [[annotation]]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[RXN-11348]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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* [[RXN-11350]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=24841 24841]
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** Category: [[annotation]]
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{{#set: ec-number=ec-4.1.99.17}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: direction=left-to-right}}
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* [[RXN-14712]]
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{{#set: common-name=phosphomethylpyrimidine synthase thic}}
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** Category: [[annotation]]
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{{#set: nb gene associated=2}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb pathway associated=1}}
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* [[RXN-15521]]
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{{#set: reconstruction category=annotation}}
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** Category: [[annotation]]
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{{#set: reconstruction tool=pathwaytools}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction comment=n.a}}
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* [[RXN-16650]]
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{{#set: reconstruction source=genome}}
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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</div>
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== Pathway(s) associated ==
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* [[PWY-6385]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-5265]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY-6470]]
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** '''5''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6471]]
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[PWY0-1586]]
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** '''4''' reactions found over '''12''' reactions in the full pathway
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{{#set: transcription-direction=positive}}
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{{#set: centisome-position=51.766586    }}
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{{#set: left-end-position=1989392}}
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{{#set: right-end-position=1992784}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=8}}
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{{#set: nb pathway associated=5}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS08125

  • transcription-direction:
    • positive
  • centisome-position:
    • 51.766586
  • left-end-position:
    • 1989392
  • right-end-position:
    • 1992784

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6385
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5265
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-6470
    • 5 reactions found over 9 reactions in the full pathway
  • PWY-6471
    • 6 reactions found over 6 reactions in the full pathway
  • PWY0-1586
    • 4 reactions found over 12 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS08125&oldid=94661"