Difference between revisions of "FSU RS14875"

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(Created page with "Category:reaction == Reaction RXN-9531 == * common-name: ** 3-oxo-dodecanoyl-[acyl-carrier protein] synthase ** beta-ketoacyl-acp synthase ii * ec-number: ** [http://enzym...")
(Created page with "Category:gene == Gene FSU_RS14875 == * transcription-direction: ** negative * centisome-position: ** 93.98783 * left-end-position: ** 3611956 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-9531 ==
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== Gene FSU_RS14875 ==
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* common-name:
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* transcription-direction:
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** 3-oxo-dodecanoyl-[acyl-carrier protein] synthase
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** negative
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** beta-ketoacyl-acp synthase ii
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* centisome-position:
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* ec-number:
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** 93.98783   
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** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
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* left-end-position:
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
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** 3611956
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* direction:
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* right-end-position:
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** left-to-right
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** 3613065
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[Decanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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* [[fsucgem]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[FISUC_RS15210]]
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* [[HISTAMINOTRANS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS01605]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FISUC_RS15410]]
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[annotation]]
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* Gene: [[FSU_RS01400]]
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* [[TYROSINE-AMINOTRANSFERASE-RXN]]
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** Category: [[annotation]]
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** Category: [[orthology]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s) ==
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*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''22''' reactions found over '''31''' reactions in the full pathway
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== Pathway(s) associated ==
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== Reconstruction information  ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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* [[HISTSYN-PWY]]
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== External links  ==
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** '''10''' reactions found over '''10''' reactions in the full pathway
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{{#set: common-name=3-oxo-dodecanoyl-[acyl-carrier protein] synthase|beta-ketoacyl-acp synthase ii}}
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* [[PWY-3581]]
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{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
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** '''2''' reactions found over '''11''' reactions in the full pathway
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{{#set: direction=left-to-right}}
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* [[TYRSYN]]
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{{#set: nb gene associated=4}}
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** '''3''' reactions found over '''3''' reactions in the full pathway
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{{#set: nb pathway associated=1}}
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* [[PWY-5048]]
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{{#set: reconstruction category=annotation}}
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** '''1''' reactions found over '''10''' reactions in the full pathway
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{{#set: reconstruction tool=pathwaytools}}
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* [[PWY-5886]]
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{{#set: reconstruction comment=n.a}}
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** '''1''' reactions found over '''1''' reactions in the full pathway
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{{#set: reconstruction source=genome}}
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* [[PWY-8016]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY3O-4108]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5151]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[TYRFUMCAT-PWY]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7514]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-7518]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-5754]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=negative}}
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{{#set: centisome-position=93.98783    }}
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{{#set: left-end-position=3611956}}
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{{#set: right-end-position=3613065}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=2}}
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{{#set: nb pathway associated=12}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS14875

  • transcription-direction:
    • negative
  • centisome-position:
    • 93.98783
  • left-end-position:
    • 3611956
  • right-end-position:
    • 3613065

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • HISTSYN-PWY
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-3581
    • 2 reactions found over 11 reactions in the full pathway
  • TYRSYN
    • 3 reactions found over 3 reactions in the full pathway
  • PWY-5048
    • 1 reactions found over 10 reactions in the full pathway
  • PWY-5886
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-8016
    • 1 reactions found over 5 reactions in the full pathway
  • PWY3O-4108
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-5151
    • 1 reactions found over 2 reactions in the full pathway
  • TYRFUMCAT-PWY
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7514
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-7518
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-5754
    • 1 reactions found over 5 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS14875&oldid=94664"