Difference between revisions of "FSU RS04105"

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(Created page with "Category:reaction == Reaction ASPDECARBOX-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.11 ec-4.1.1.11] * direction: ** left-to-right * common-name: ** asparta...")
(Created page with "Category:gene == Gene FSU_RS04105 == * transcription-direction: ** positive * centisome-position: ** 25.091621 * left-end-position: ** 964272 * right-end-position: **...")
 
(7 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction ASPDECARBOX-RXN ==
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== Gene FSU_RS04105 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.1.1.11 ec-4.1.1.11]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 25.091621   
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* common-name:
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* left-end-position:
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** aspartate 1-decarboxylase
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** 964272
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== Reaction formula ==
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* right-end-position:
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* 1 [[L-ASPARTATE]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[B-ALANINE]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** 965393
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS02275]]
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* [[fsucgem]]
 +
== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[RXN-12587]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS04165]]
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* [[RXN-12588]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-12621]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-14382]]
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== Pathway(s) ==
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** Category: [[annotation]]
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* [[PWY-5155]], &beta;-alanine biosynthesis III:
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14384]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-14385]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-14386]]
 +
** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-15881]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-20037]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9787]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-308]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-6891]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6892]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-7250]]
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** '''4''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7892]]
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** '''3''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY-7891]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7904]]
 +
** '''1''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-7889]]
 +
** '''1''' reactions found over '''4''' reactions in the full pathway
 +
* [[PWY-7888]]
 +
** '''1''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-6823]]
 +
** '''1''' reactions found over '''8''' reactions in the full pathway
 +
* [[PWY0-1021]]
 
** '''1''' reactions found over '''1''' reactions in the full pathway
 
** '''1''' reactions found over '''1''' reactions in the full pathway
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== Reconstruction information  ==
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</div>
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: transcription-direction=positive}}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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{{#set: centisome-position=25.091621    }}
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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{{#set: left-end-position=964272}}
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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{{#set: right-end-position=965393}}
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== External links  ==
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{{#set: organism associated=fsucgem}}
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* RHEA:
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{{#set: nb reaction associated=11}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19498 19498]
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{{#set: nb pathway associated=10}}
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00489 R00489]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P52999 P52999]
 
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** [http://www.uniprot.org/uniprot/O66773 O66773]
 
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** [http://www.uniprot.org/uniprot/Q9JZ56 Q9JZ56]
 
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** [http://www.uniprot.org/uniprot/P56065 P56065]
 
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** [http://www.uniprot.org/uniprot/P65660 P65660]
 
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** [http://www.uniprot.org/uniprot/P0A790 P0A790]
 
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** [http://www.uniprot.org/uniprot/Q9X037 Q9X037]
 
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** [http://www.uniprot.org/uniprot/Q9ZN30 Q9ZN30]
 
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** [http://www.uniprot.org/uniprot/Q9PIK3 Q9PIK3]
 
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** [http://www.uniprot.org/uniprot/Q9JU49 Q9JU49]
 
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** [http://www.uniprot.org/uniprot/Q9RWF1 Q9RWF1]
 
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** [http://www.uniprot.org/uniprot/Q55382 Q55382]
 
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{{#set: ec-number=ec-4.1.1.11}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=aspartate 1-decarboxylase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum|genome|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS04105

  • transcription-direction:
    • positive
  • centisome-position:
    • 25.091621
  • left-end-position:
    • 964272
  • right-end-position:
    • 965393

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6891
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6892
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7250
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-7892
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7891
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7904
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7889
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7888
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6823
    • 1 reactions found over 8 reactions in the full pathway
  • PWY0-1021
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS04105&oldid=94677"