Difference between revisions of "FSU RS04105"

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(Created page with "Category:reaction == Reaction MALATE-DEH-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.37 ec-1.1.1.37] * direction: ** reversible * common-name: ** malate dehy...")
(Created page with "Category:gene == Gene FSU_RS04105 == * transcription-direction: ** positive * centisome-position: ** 25.091621 * left-end-position: ** 964272 * right-end-position: **...")
 
(6 intermediate revisions by 2 users not shown)
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−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction MALATE-DEH-RXN ==
+
== Gene FSU_RS04105 ==
−
* ec-number:
+
* transcription-direction:
−
** [http://enzyme.expasy.org/EC/1.1.1.37 ec-1.1.1.37]
+
** positive
−
* direction:
+
* centisome-position:
−
** reversible
+
** 25.091621   
−
* common-name:
+
* left-end-position:
−
** malate dehydrogenase
+
** 964272
−
* synonymous:
+
* right-end-position:
−
** malate dehydrogenation
+
** 965393
−
== Reaction formula ==
+
== Organism(s) associated with this gene  ==
−
* 1 [[MAL]][c] '''+''' 1 [[NAD]][c] '''<=>''' 1 [[NADH]][c] '''+''' 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c]
+
* [[fsucgem]]
−
== Gene(s) associated with this reaction  ==
+
== Reaction(s) associated ==
−
* Gene: [[FSU_RS15130]]
+
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[RXN-12587]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12588]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-12621]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14382]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
* [[RXN-14384]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[manual]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
−
* Gene: [[FISUC_RS13155]]
+
* [[RXN-14385]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
== Pathway(s) ==
+
* [[RXN-14386]]
 +
** Category: [[manual]]
 +
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 +
* [[RXN-15881]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-20037]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9787]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN0-308]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
+
* [[PWY-6891]]
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
 
−
** '''8''' reactions found over '''11''' reactions in the full pathway
 
−
* [[MALATE-ASPARTATE-SHUTTLE-PWY]], L-aspartate degradation II:
 
−
** '''2''' reactions found over '''2''' reactions in the full pathway
 
−
* [[PWY-7115]], C4 photosynthetic carbon assimilation cycle, NAD-ME type:
 
−
** '''9''' reactions found over '''10''' reactions in the full pathway
 
−
* [[PWY-7383]], anaerobic energy metabolism (invertebrates, cytosol):
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
 
−
** '''16''' reactions found over '''16''' reactions in the full pathway
 
−
* [[PWY-6728]], methylaspartate cycle:
 
−
** '''9''' reactions found over '''19''' reactions in the full pathway
 
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
 
−
** '''4''' reactions found over '''6''' reactions in the full pathway
 
−
* [[PWY-561]], superpathway of glyoxylate cycle and fatty acid degradation:
 
−
** '''6''' reactions found over '''4''' reactions in the full pathway
 
−
* [[P23-PWY]], reductive TCA cycle I:
 
−
** '''11''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P42-PWY]], incomplete reductive TCA cycle:
 
−
** '''7''' reactions found over '''7''' reactions in the full pathway
 
−
* [[PWY-1622]], formaldehyde assimilation I (serine pathway):
 
−
** '''6''' reactions found over '''13''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II:
 
−
** '''8''' reactions found over '''12''' reactions in the full pathway
 
−
* [[P108-PWY]], pyruvate fermentation to propanoate I:
 
 
** '''4''' reactions found over '''7''' reactions in the full pathway
 
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY66-399]], gluconeogenesis III:
+
* [[PWY-6892]]
−
** '''12''' reactions found over '''12''' reactions in the full pathway
+
** '''5''' reactions found over '''7''' reactions in the full pathway
−
* [[GLUCONEO-PWY]], gluconeogenesis I:
+
* [[PWY-7250]]
−
** '''13''' reactions found over '''13''' reactions in the full pathway
+
** '''4''' reactions found over '''10''' reactions in the full pathway
−
* [[TCA]], TCA cycle I (prokaryotic):
+
* [[PWY-7892]]
−
** '''10''' reactions found over '''10''' reactions in the full pathway
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
+
* [[PWY-7891]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY66-398]], TCA cycle III (animals):
+
* [[PWY-7904]]
−
** '''8''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
+
* [[PWY-7889]]
−
** '''10''' reactions found over '''11''' reactions in the full pathway
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
</div>
+
* [[PWY-7888]]
−
== Reconstruction information  ==
+
** '''1''' reactions found over '''7''' reactions in the full pathway
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
* [[PWY-6823]]
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
** '''1''' reactions found over '''8''' reactions in the full pathway
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* [[PWY0-1021]]
−
== External links  ==
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21435 21435]
 
−
* PIR:
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A32472 A32472]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A49496 A49496]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A60689 A60689]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64110 C64110]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=D81399 D81399]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEBYMC DEBYMC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEBYMM DEBYMM]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEBYMP DEBYMP]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEEBM DEEBM]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEECM DEECM]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEMSMC DEMSMC]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEMSMM DEMSMM]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPGMM DEPGMM]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPUGW DEPUGW]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DEPUMW DEPUMW]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DERTMM DERTMM]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=DETWMA DETWMA]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F85551 F85551]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G01650 G01650]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H64477 H64477]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=I40383 I40383]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0040 PA0040]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PA0079 PA0079]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=PN0162 PN0162]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S03352 S03352]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S03958 S03958]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04956 S04956]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04957 S04957]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04958 S04958]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04959 S04959]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04960 S04960]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S04961 S04961]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S07574 S07574]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S08981 S08981]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S44167 S44167]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S52039 S52039]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57958 S57958]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S61213 S61213]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S75735 S75735]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T03272 T03272]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06325 T06325]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06326 T06326]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06327 T06327]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06328 T06328]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T06386 T06386]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08015 T08015]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08077 T08077]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T08177 T08177]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09228 T09228]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09263 T09263]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09286 T09286]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09291 T09291]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T09294 T09294]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T12433 T12433]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T18570 T18570]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45206 T45206]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T45208 T45208]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T49932 T49932]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T51311 T51311]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T51862 T51862]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/Q07841 Q07841]
 
−
** [http://www.uniprot.org/uniprot/P33163 P33163]
 
−
** [http://www.uniprot.org/uniprot/P44427 P44427]
 
−
** [http://www.uniprot.org/uniprot/Q9PHY2 Q9PHY2]
 
−
** [http://www.uniprot.org/uniprot/P22133 P22133]
 
−
** [http://www.uniprot.org/uniprot/P17505 P17505]
 
−
** [http://www.uniprot.org/uniprot/P32419 P32419]
 
−
** [http://www.uniprot.org/uniprot/P25077 P25077]
 
−
** [http://www.uniprot.org/uniprot/P14152 P14152]
 
−
** [http://www.uniprot.org/uniprot/Q8R1P0 Q8R1P0]
 
−
** [http://www.uniprot.org/uniprot/P19446 P19446]
 
−
** [http://www.uniprot.org/uniprot/P17783 P17783]
 
−
** [http://www.uniprot.org/uniprot/P04636 P04636]
 
−
** [http://www.uniprot.org/uniprot/P58408 P58408]
 
−
** [http://www.uniprot.org/uniprot/Q58820 Q58820]
 
−
** [http://www.uniprot.org/uniprot/P49814 P49814]
 
−
** [http://www.uniprot.org/uniprot/Q93ZA7 Q93ZA7]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Y9 Q7M4Y9]
 
−
** [http://www.uniprot.org/uniprot/Q7M4Z0 Q7M4Z0]
 
−
** [http://www.uniprot.org/uniprot/P10887 P10887]
 
−
** [http://www.uniprot.org/uniprot/P11386 P11386]
 
−
** [http://www.uniprot.org/uniprot/P19983 P19983]
 
−
** [http://www.uniprot.org/uniprot/P19981 P19981]
 
−
** [http://www.uniprot.org/uniprot/P19979 P19979]
 
−
** [http://www.uniprot.org/uniprot/P19977 P19977]
 
−
** [http://www.uniprot.org/uniprot/P19982 P19982]
 
−
** [http://www.uniprot.org/uniprot/P19978 P19978]
 
−
** [http://www.uniprot.org/uniprot/P19980 P19980]
 
−
** [http://www.uniprot.org/uniprot/P16142 P16142]
 
−
** [http://www.uniprot.org/uniprot/P46487 P46487]
 
−
** [http://www.uniprot.org/uniprot/P46488 P46488]
 
−
** [http://www.uniprot.org/uniprot/Q43744 Q43744]
 
−
** [http://www.uniprot.org/uniprot/Q59202 Q59202]
 
−
** [http://www.uniprot.org/uniprot/Q55383 Q55383]
 
−
** [http://www.uniprot.org/uniprot/Q42972 Q42972]
 
−
** [http://www.uniprot.org/uniprot/O81278 O81278]
 
−
** [http://www.uniprot.org/uniprot/O81279 O81279]
 
−
** [http://www.uniprot.org/uniprot/O65363 O65363]
 
−
** [http://www.uniprot.org/uniprot/O65364 O65364]
 
−
** [http://www.uniprot.org/uniprot/O81609 O81609]
 
−
** [http://www.uniprot.org/uniprot/Q43743 Q43743]
 
−
** [http://www.uniprot.org/uniprot/Q42686 Q42686]
 
−
** [http://www.uniprot.org/uniprot/P93106 P93106]
 
−
** [http://www.uniprot.org/uniprot/Q04820 Q04820]
 
−
** [http://www.uniprot.org/uniprot/O48903 O48903]
 
−
** [http://www.uniprot.org/uniprot/O48904 O48904]
 
−
** [http://www.uniprot.org/uniprot/O48905 O48905]
 
−
** [http://www.uniprot.org/uniprot/O48906 O48906]
 
−
** [http://www.uniprot.org/uniprot/O24047 O24047]
 
−
** [http://www.uniprot.org/uniprot/Q9XTB4 Q9XTB4]
 
−
** [http://www.uniprot.org/uniprot/P50917 P50917]
 
−
** [http://www.uniprot.org/uniprot/Q49981 Q49981]
 
−
** [http://www.uniprot.org/uniprot/Q9ZP05 Q9ZP05]
 
−
** [http://www.uniprot.org/uniprot/Q9ZP06 Q9ZP06]
 
−
** [http://www.uniprot.org/uniprot/Q9SN86 Q9SN86]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R00342 R00342]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-1.1.1.37}}
+
{{#set: transcription-direction=positive}}
−
{{#set: direction=reversible}}
+
{{#set: centisome-position=25.091621    }}
−
{{#set: common-name=malate dehydrogenase}}
+
{{#set: left-end-position=964272}}
−
{{#set: synonymous=malate dehydrogenation}}
+
{{#set: right-end-position=965393}}
−
{{#set: nb gene associated=2}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: nb pathway associated=20}}
+
{{#set: nb reaction associated=11}}
−
{{#set: reconstruction category=annotation|orthology}}
+
{{#set: nb pathway associated=10}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS04105

  • transcription-direction:
    • positive
  • centisome-position:
    • 25.091621
  • left-end-position:
    • 964272
  • right-end-position:
    • 965393

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6891
    • 4 reactions found over 7 reactions in the full pathway
  • PWY-6892
    • 5 reactions found over 7 reactions in the full pathway
  • PWY-7250
    • 4 reactions found over 10 reactions in the full pathway
  • PWY-7892
    • 3 reactions found over 8 reactions in the full pathway
  • PWY-7891
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7904
    • 1 reactions found over 5 reactions in the full pathway
  • PWY-7889
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-7888
    • 1 reactions found over 7 reactions in the full pathway
  • PWY-6823
    • 1 reactions found over 8 reactions in the full pathway
  • PWY0-1021
    • 1 reactions found over 1 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS04105&oldid=94677"