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| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction KDPGALDOL-RXN == | + | == Gene FSU_RS05345 == |
| − | * ec-number:
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| − | ** [http://enzyme.expasy.org/EC/4.1.2.55 ec-4.1.2.55]
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| − | ** [http://enzyme.expasy.org/EC/4.1.2.14 ec-4.1.2.14]
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| − | * direction:
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| − | ** left-to-right
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| | * common-name: | | * common-name: |
| − | ** bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | + | ** dnae |
| − | == Reaction formula == | + | * transcription-direction: |
| − | * 1 [[2-KETO-3-DEOXY-6-P-GLUCONATE]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[PYRUVATE]][c] | + | ** negative |
| − | == Gene(s) associated with this reaction == | + | * centisome-position: |
| − | * Gene: [[FISUC_RS07950]] | + | ** 32.70418 |
| | + | * left-end-position: |
| | + | ** 1256823 |
| | + | * right-end-position: |
| | + | ** 1260680 |
| | + | == Organism(s) associated with this gene == |
| | + | * [[fsucgem]] |
| | + | == Reaction(s) associated == |
| | + | * [[DNA-DIRECTED-DNA-POLYMERASE-RXN]] |
| | ** Category: [[annotation]] | | ** Category: [[annotation]] |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
| − | * Gene: [[FSU_RS09880]]
| + | {{#set: common-name=dnae}} |
| − | ** Category: [[annotation]]
| + | {{#set: transcription-direction=negative}} |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
| + | {{#set: centisome-position=32.70418 }} |
| − | ** Category: [[orthology]]
| + | {{#set: left-end-position=1256823}} |
| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: right-end-position=1260680}} |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: organism associated=fsucgem}} |
| − | == Pathway(s) ==
| + | {{#set: nb reaction associated=1}} |
| − | * [[PWY-2221]], Entner-Doudoroff pathway III (semi-phosphorylative):
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| − | ** '''8''' reactions found over '''9''' reactions in the full pathway
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| − | * [[ENTNER-DOUDOROFF-PWY]], Entner-Doudoroff shunt:
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| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
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| − | * [[PWY-7310]], D-glucosaminate degradation:
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| − | ** '''1''' reactions found over '''3''' reactions in the full pathway
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| − | * [[PWY-7242]], D-fructuronate degradation:
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| − | ** '''2''' reactions found over '''4''' reactions in the full pathway
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| − | * [[PWY-6507]], 4-deoxy-L-threo-hex-4-enopyranuronate degradation:
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| − | ** '''2''' reactions found over '''5''' reactions in the full pathway
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| − | * [[PWY-7562]], 3,6-anhydro-α-L-galactopyranose degradation:
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| − | ** '''2''' reactions found over '''7''' reactions in the full pathway
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| − | * [[GALACTUROCAT-PWY]], D-galacturonate degradation I:
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| − | ** '''2''' reactions found over '''5''' reactions in the full pathway
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| − | == Reconstruction information ==
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| − | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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| − | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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| − | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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| − | == External links ==
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| − | * RHEA:
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| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=17090 17090]
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| − | * LIGAND-RXN:
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| − | ** [http://www.genome.jp/dbget-bin/www_bget?R05605 R05605]
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| − | * UNIPROT:
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| − | ** [http://www.uniprot.org/uniprot/P44480 P44480]
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| − | ** [http://www.uniprot.org/uniprot/P0A955 P0A955]
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| − | ** [http://www.uniprot.org/uniprot/P00885 P00885]
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| − | ** [http://www.uniprot.org/uniprot/Q9JR44 Q9JR44]
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| − | ** [http://www.uniprot.org/uniprot/O25729 O25729]
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| − | ** [http://www.uniprot.org/uniprot/Q9ZKB4 Q9ZKB4]
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| − | ** [http://www.uniprot.org/uniprot/O83578 O83578]
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| − | ** [http://www.uniprot.org/uniprot/Q9WXS1 Q9WXS1]
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| − | ** [http://www.uniprot.org/uniprot/P50846 P50846]
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| − | ** [http://www.uniprot.org/uniprot/P38448 P38448]
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| − | ** [http://www.uniprot.org/uniprot/Q55872 Q55872]
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| − | ** [http://www.uniprot.org/uniprot/P94802 P94802]
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| − | {{#set: ec-number=ec-4.1.2.14|ec-4.1.2.55}} | |
| − | {{#set: direction=left-to-right}} | |
| − | {{#set: common-name=bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase}} | |
| − | {{#set: nb gene associated=2}} | |
| − | {{#set: nb pathway associated=7}} | |
| − | {{#set: reconstruction category=annotation|orthology}} | |
| − | {{#set: reconstruction tool=pathwaytools|orthofinder}} | |
| − | {{#set: reconstruction comment=n.a}}
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| − | {{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
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