Difference between revisions of "FISUC RS08325"

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(Created page with "Category:reaction == Reaction PYRUVFORMLY-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54] * direction: ** reversible * common-name: ** formate c-...")
 
(Created page with "Category:gene == Gene FISUC_RS08325 == * transcription-direction: ** negative * centisome-position: ** 53.148895 * left-end-position: ** 2042318 * right-end-position:...")
 
(14 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction PYRUVFORMLY-RXN ==
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== Gene FISUC_RS08325 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54]
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** negative
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* direction:
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* centisome-position:
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** reversible
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** 53.148895   
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* common-name:
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* left-end-position:
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** formate c-acetyltransferase
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** 2042318
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== Reaction formula ==
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* right-end-position:
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* 1 [[ACETYL-COA]][c] '''+''' 1 [[FORMATE]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c]
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** 2042899
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS05215]]
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* [[fsucgem]]
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== Reaction(s) associated ==
 +
* [[GUANPRIBOSYLTRAN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS07120]]
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* [[HYPOXANPRIBOSYLTRAN-RXN]]
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS07105]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[XANPRIBOSYLTRAN-RXN]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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== Pathway(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6620]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''2''' reactions found over '''2''' reactions in the full pathway
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== Pathway(s)  ==
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* [[PWY-6599]]
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* [[PWY-5485]], pyruvate fermentation to acetate IV:
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** '''4''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6609]]
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* [[PWY-5480]], pyruvate fermentation to ethanol I:
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** '''4''' reactions found over '''4''' reactions in the full pathway
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6610]]
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* [[PWY-5493]], reductive monocarboxylic acid cycle:
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** '''2''' reactions found over '''3''' reactions in the full pathway
 +
* [[SALVPURINE2-PWY]]
 
** '''2''' reactions found over '''2''' reactions in the full pathway
 
** '''2''' reactions found over '''2''' reactions in the full pathway
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* [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
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{{#set: transcription-direction=negative}}
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** '''9''' reactions found over '''7''' reactions in the full pathway
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{{#set: centisome-position=53.148895    }}
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* [[FERMENTATION-PWY]], mixed acid fermentation:
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{{#set: left-end-position=2042318}}
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** '''14''' reactions found over '''16''' reactions in the full pathway
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{{#set: right-end-position=2042899}}
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== Reconstruction information  ==
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{{#set: organism associated=fsucgem}}
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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{{#set: nb reaction associated=3}}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11847 11847]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00212 R00212]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P32674 P32674]
 
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** [http://www.uniprot.org/uniprot/O26446 O26446]
 
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** [http://www.uniprot.org/uniprot/P75793 P75793]
 
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** [http://www.uniprot.org/uniprot/P42632 P42632]
 
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** [http://www.uniprot.org/uniprot/O28823 O28823]
 
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** [http://www.uniprot.org/uniprot/O32797 O32797]
 
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** [http://www.uniprot.org/uniprot/Q46266 Q46266]
 
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** [http://www.uniprot.org/uniprot/P09373 P09373]
 
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** [http://www.uniprot.org/uniprot/P37836 P37836]
 
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{{#set: ec-number=ec-2.3.1.54}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=formate c-acetyltransferase}}
 
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{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=5}}
 
{{#set: nb pathway associated=5}}
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum|genome|faecalibacterium|bthetaiotaomicron|ecoli|bifidobacterium}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS08325

  • transcription-direction:
    • negative
  • centisome-position:
    • 53.148895
  • left-end-position:
    • 2042318
  • right-end-position:
    • 2042899

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6620
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6599
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-6609
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6610
    • 2 reactions found over 3 reactions in the full pathway
  • SALVPURINE2-PWY
    • 2 reactions found over 2 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS08325&oldid=94682"