Difference between revisions of "FISUC RS01785"

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(Created page with "Category:reaction == Reaction OXALODECARB-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112] * direction: ** left-to-right == Reaction formula ==...")
(Created page with "Category:gene == Gene FISUC_RS01785 == * transcription-direction: ** negative * centisome-position: ** 10.404293 * left-end-position: ** 399799 * right-end-position: *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction OXALODECARB-RXN ==
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== Gene FISUC_RS01785 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.1.1.112 ec-4.1.1.112]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 10.404293   
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== Reaction formula ==
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* left-end-position:
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* 1 [[OXALACETIC_ACID]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[CARBON-DIOXIDE]][c] '''+''' 1 [[PYRUVATE]][c]
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** 399799
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== Gene(s) associated with this reaction ==
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* right-end-position:
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* Gene: [[FSU_RS09880]]
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** 401412
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** Category: [[orthology]]
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== Organism(s) associated with this gene ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fsucgem]]
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* Gene: [[FSU_RS09935]]
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== Reaction(s) associated ==
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** Category: [[orthology]]
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* [[PHOSMANMUT-RXN]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** Category: [[annotation]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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== Pathway(s) associated ==
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* [[P184-PWY]], protocatechuate degradation I (meta-cleavage pathway):
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* [[PWY-7586]]
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** '''1''' reactions found over '''8''' reactions in the full pathway
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-6339]], syringate degradation:
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* [[PWY-5659]]
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** '''1''' reactions found over '''9''' reactions in the full pathway
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[METHYLGALLATE-DEGRADATION-PWY]], methylgallate degradation:
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* [[PWY-7456]]
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** '''1''' reactions found over '''6''' reactions in the full pathway
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-882]]
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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{{#set: transcription-direction=negative}}
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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{{#set: centisome-position=10.404293    }}
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== External links  ==
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{{#set: left-end-position=399799}}
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* RHEA:
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{{#set: right-end-position=401412}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15642 15642]
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{{#set: organism associated=fsucgem}}
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* LIGAND-RXN:
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{{#set: nb reaction associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00217 R00217]
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{{#set: nb pathway associated=4}}
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P13187 P13187]
 
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** [http://www.uniprot.org/uniprot/P13155 P13155]
 
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** [http://www.uniprot.org/uniprot/P13156 P13156]
 
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** [http://www.uniprot.org/uniprot/Q58628 Q58628]
 
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{{#set: ec-number=ec-4.1.1.112}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=3}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=ecoli|faecalibacterium|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS01785

  • transcription-direction:
    • negative
  • centisome-position:
    • 10.404293
  • left-end-position:
    • 399799
  • right-end-position:
    • 401412

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7586
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5659
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7456
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-882
    • 3 reactions found over 8 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS01785&oldid=94687"