Difference between revisions of "FISUC RS01785"

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(Created page with "Category:reaction == Reaction MALONYL-COA-ACP-TRANSACYL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86] ** [http://enzyme.expasy.org/EC/2.3.1.85...")
(Created page with "Category:gene == Gene FISUC_RS01785 == * transcription-direction: ** negative * centisome-position: ** 10.404293 * left-end-position: ** 399799 * right-end-position: *...")
 
(5 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction MALONYL-COA-ACP-TRANSACYL-RXN ==
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== Gene FISUC_RS01785 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.3.1.86 ec-2.3.1.86]
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** negative
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** [http://enzyme.expasy.org/EC/2.3.1.85 ec-2.3.1.85]
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* centisome-position:
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** [http://enzyme.expasy.org/EC/2.3.1.39 ec-2.3.1.39]
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** 10.404293   
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* direction:
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* left-end-position:
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** left-to-right
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** 399799
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* common-name:
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* right-end-position:
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** acp s-malonyltransferase
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** 401412
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[ACP]][c] '''+''' 1 [[MALONYL-COA]][c] '''=>''' 1 [[CO-A]][c] '''+''' 1 [[MALONYL-ACP]][c]
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* [[fsucgem]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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* Gene: [[FSU_RS00290]]
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* [[PHOSMANMUT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7586]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS14095]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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* Gene: [[FSU_RS12070]]
 
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** Category: [[orthology]]
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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== Pathway(s) ==
 
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* [[PWY-6799]], fatty acid biosynthesis (plant mitochondria):
 
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** '''1''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-4381]], fatty acid biosynthesis initiation I:
 
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-8012]], mupirocin biosynthesis:
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* [[PWY-5659]]
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** '''2''' reactions found over '''26''' reactions in the full pathway
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7388]], octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast):
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* [[PWY-7456]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** '''3''' reactions found over '''7''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-882]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''3''' reactions found over '''8''' reactions in the full pathway
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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{{#set: transcription-direction=negative}}
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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{{#set: centisome-position=10.404293    }}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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{{#set: left-end-position=399799}}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: right-end-position=401412}}
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== External links  ==
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{{#set: organism associated=fsucgem}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: nb reaction associated=1}}
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01626 R01626]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P72391 P72391]
 
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** [http://www.uniprot.org/uniprot/P49327 P49327]
 
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** [http://www.uniprot.org/uniprot/O34825 O34825]
 
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** [http://www.uniprot.org/uniprot/Q9RT24 Q9RT24]
 
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** [http://www.uniprot.org/uniprot/Q9JW58 Q9JW58]
 
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** [http://www.uniprot.org/uniprot/P0AAI9 P0AAI9]
 
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** [http://www.uniprot.org/uniprot/O24916 O24916]
 
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** [http://www.uniprot.org/uniprot/Q9JXR4 Q9JXR4]
 
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** [http://www.uniprot.org/uniprot/Q9ZCJ6 Q9ZCJ6]
 
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** [http://www.uniprot.org/uniprot/Q9YBK5 Q9YBK5]
 
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** [http://www.uniprot.org/uniprot/Q9PJ11 Q9PJ11]
 
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** [http://www.uniprot.org/uniprot/P43712 P43712]
 
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** [http://www.uniprot.org/uniprot/Q9Z8P1 Q9Z8P1]
 
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** [http://www.uniprot.org/uniprot/O67041 O67041]
 
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** [http://www.uniprot.org/uniprot/Q9ZMY1 Q9ZMY1]
 
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** [http://www.uniprot.org/uniprot/Q9PKF6 Q9PKF6]
 
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** [http://www.uniprot.org/uniprot/P63458 P63458]
 
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** [http://www.uniprot.org/uniprot/O84241 O84241]
 
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** [http://www.uniprot.org/uniprot/Q9WZQ5 Q9WZQ5]
 
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** [http://www.uniprot.org/uniprot/P71019 P71019]
 
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** [http://www.uniprot.org/uniprot/P07149 P07149]
 
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** [http://www.uniprot.org/uniprot/P73242 P73242]
 
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** [http://www.uniprot.org/uniprot/Q8RU07 Q8RU07]
 
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** [http://www.uniprot.org/uniprot/Q54205 Q54205]
 
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** [http://www.uniprot.org/uniprot/O54437 O54437]
 
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** [http://www.uniprot.org/uniprot/Q56692 Q56692]
 
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** [http://www.uniprot.org/uniprot/O13698 O13698]
 
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** [http://www.uniprot.org/uniprot/Q9RA34 Q9RA34]
 
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** [http://www.uniprot.org/uniprot/O69476 O69476]
 
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** [http://www.uniprot.org/uniprot/P12276 P12276]
 
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** [http://www.uniprot.org/uniprot/P12785 P12785]
 
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</div>
 
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{{#set: ec-number=ec-2.3.1.85|ec-2.3.1.39|ec-2.3.1.86}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=acp s-malonyltransferase}}
 
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{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome|plantarum|faecalibacterium|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS01785

  • transcription-direction:
    • negative
  • centisome-position:
    • 10.404293
  • left-end-position:
    • 399799
  • right-end-position:
    • 401412

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7586
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5659
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7456
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-882
    • 3 reactions found over 8 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS01785&oldid=94687"