Difference between revisions of "FSU RS04505"

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(Created page with "Category:reaction == Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52] * direction: ** left-to-right * comm...")
(Created page with "Category:gene == Gene FSU_RS04505 == * common-name: ** dnag * transcription-direction: ** positive * centisome-position: ** 27.461302 * left-end-position: ** 1055339 *...")
 
(6 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 4-HYDROXY-2-KETOPIMELATE-LYSIS-RXN ==
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== Gene FSU_RS04505 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/4.1.2.52 ec-4.1.2.52]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** hpch/hpai aldolase/citrate lyase family protein
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** dnag
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== Reaction formula ==
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* transcription-direction:
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* 1 [[CPD-804]][c] '''=>''' 1 [[PYRUVATE]][c] '''+''' 1 [[SUCC-S-ALD]][c]
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** positive
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FISUC_RS13400]]
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** 27.461302   
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* left-end-position:
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** 1055339
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* right-end-position:
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** 1057507
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[RXN0-5021]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15375]]
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{{#set: common-name=dnag}}
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** Category: [[annotation]]
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{{#set: transcription-direction=positive}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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{{#set: centisome-position=27.461302    }}
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== Pathway(s)  ==
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{{#set: left-end-position=1055339}}
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* [[3-HYDROXYPHENYLACETATE-DEGRADATION-PWY]], 4-hydroxyphenylacetate degradation:
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{{#set: right-end-position=1057507}}
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** '''2''' reactions found over '''8''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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== Reconstruction information  ==
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{{#set: nb reaction associated=1}}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=25789 25789]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01647 R01647]
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01645 R01645]
 
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{{#set: ec-number=ec-4.1.2.52}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=hpch/hpai aldolase/citrate lyase family protein}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation}}
 
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{{#set: reconstruction tool=pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS04505

  • common-name:
    • dnag
  • transcription-direction:
    • positive
  • centisome-position:
    • 27.461302
  • left-end-position:
    • 1055339
  • right-end-position:
    • 1057507

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS04505&oldid=94696"