Difference between revisions of "FSU RS01295"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction HISTPRATPHYD-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.31 ec-3.6.1.31] * direction: ** left-to-right * common-name: ** phosph...")
(Created page with "Category:gene == Gene FSU_RS01295 == * transcription-direction: ** negative * centisome-position: ** 8.074179 * left-end-position: ** 310291 * right-end-position: ** 3...")
 
(9 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction HISTPRATPHYD-RXN ==
+
== Gene FSU_RS01295 ==
−
* ec-number:
+
* transcription-direction:
−
** [http://enzyme.expasy.org/EC/3.6.1.31 ec-3.6.1.31]
+
** negative
−
* direction:
+
* centisome-position:
−
** left-to-right
+
** 8.074179   
−
* common-name:
+
* left-end-position:
−
** phosphoribosyl-atp diphosphatase
+
** 310291
−
== Reaction formula ==
+
* right-end-position:
−
* 1 [[PHOSPHORIBOSYL-ATP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[PHOSPHORIBOSYL-AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 2 [[PROTON]][c]
+
** 311244
−
== Gene(s) associated with this reaction  ==
+
== Organism(s) associated with this gene  ==
−
* Gene: [[FISUC_RS05705]]
+
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[MYRISTOYLACYLTRAN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS01510]]
+
== Pathway(s) associated ==
−
** Category: [[orthology]]
+
* [[KDO-LIPASYN-PWY]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** '''2''' reactions found over '''2''' reactions in the full pathway
−
*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[KDO-NAGLIPASYN-PWY]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** '''5''' reactions found over '''4''' reactions in the full pathway
−
* Gene: [[FSU_RS07605]]
+
{{#set: transcription-direction=negative}}
−
** Category: [[annotation]]
+
{{#set: centisome-position=8.074179    }}
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
{{#set: left-end-position=310291}}
−
** Category: [[orthology]]
+
{{#set: right-end-position=311244}}
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: organism associated=fsucgem}}
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
{{#set: nb reaction associated=1}}
−
== Pathway(s) ==
+
{{#set: nb pathway associated=2}}
−
* [[HISTSYN-PWY]], L-histidine biosynthesis:
 
−
** '''10''' reactions found over '''10''' reactions in the full pathway
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
== External links  ==
 
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=22829 22829]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R04035 R04035]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P44434 P44434]
 
−
** [http://www.uniprot.org/uniprot/Q9X0C5 Q9X0C5]
 
−
** [http://www.uniprot.org/uniprot/Q9PM71 Q9PM71]
 
−
** [http://www.uniprot.org/uniprot/Q02130 Q02130]
 
−
** [http://www.uniprot.org/uniprot/Q9RWD6 Q9RWD6]
 
−
** [http://www.uniprot.org/uniprot/Q9K0J4 Q9K0J4]
 
−
** [http://www.uniprot.org/uniprot/O34912 O34912]
 
−
** [http://www.uniprot.org/uniprot/P0A5B1 P0A5B1]
 
−
** [http://www.uniprot.org/uniprot/Q9KSW7 Q9KSW7]
 
−
** [http://www.uniprot.org/uniprot/Q9HUB6 Q9HUB6]
 
−
** [http://www.uniprot.org/uniprot/Q57750 Q57750]
 
−
** [http://www.uniprot.org/uniprot/O27344 O27344]
 
−
** [http://www.uniprot.org/uniprot/Q9JVJ9 Q9JVJ9]
 
−
** [http://www.uniprot.org/uniprot/O67780 O67780]
 
−
** [http://www.uniprot.org/uniprot/Q9PBD1 Q9PBD1]
 
−
** [http://www.uniprot.org/uniprot/P26722 P26722]
 
−
** [http://www.uniprot.org/uniprot/P45353 P45353]
 
−
** [http://www.uniprot.org/uniprot/Q12670 Q12670]
 
−
** [http://www.uniprot.org/uniprot/P50935 P50935]
 
−
** [http://www.uniprot.org/uniprot/P00815 P00815]
 
−
** [http://www.uniprot.org/uniprot/P07685 P07685]
 
−
** [http://www.uniprot.org/uniprot/O59667 O59667]
 
−
** [http://www.uniprot.org/uniprot/O82768 O82768]
 
−
** [http://www.uniprot.org/uniprot/P10367 P10367]
 
−
** [http://www.uniprot.org/uniprot/P06989 P06989]
 
−
</div>
 
−
{{#set: ec-number=ec-3.6.1.31}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=phosphoribosyl-atp diphosphatase}}
 
−
{{#set: nb gene associated=3}}
 
−
{{#set: nb pathway associated=1}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=bifidobacterium|ecoli|faecalibacterium|genome|bthetaiotaomicron|plantarum}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS01295

  • transcription-direction:
    • negative
  • centisome-position:
    • 8.074179
  • left-end-position:
    • 310291
  • right-end-position:
    • 311244

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS01295&oldid=94700"