Difference between revisions of "FISUC RS06965"

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(Created page with "Category:reaction == Reaction RXN0-2382 == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:gene == Gene FISUC_RS06965 == * transcription-direction: ** negative * centisome-position: ** 44.866325 * left-end-position: ** 1724049 * right-end-position:...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN0-2382 ==
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== Gene FISUC_RS06965 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.2.1.122 ec-4.2.1.122]
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** negative
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* direction:
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* centisome-position:
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** left-to-right
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** 44.866325   
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== Reaction formula ==
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* left-end-position:
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* 1 [[INDOLE]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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** 1724049
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 1725023
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* Gene: [[FISUC_RS00915]]
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[DNA-DIRECTED-RNA-POLYMERASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS00910]]
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{{#set: transcription-direction=negative}}
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** Category: [[annotation]]
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{{#set: centisome-position=44.866325    }}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: left-end-position=1724049}}
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* Gene: [[FSU_RS02790]]
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{{#set: right-end-position=1725023}}
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** Category: [[annotation]]
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{{#set: organism associated=fsucgem}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction associated=1}}
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS02795]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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</div>
 
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== Pathway(s)  ==
 
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* [[TRPSYN-PWY]], L-tryptophan biosynthesis:
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=26435 26435]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R00674 R00674]
 
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{{#set: ec-number=ec-4.2.1.122}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: nb gene associated=4}}
 
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{{#set: nb pathway associated=1}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome|bifidobacterium|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS06965

  • transcription-direction:
    • negative
  • centisome-position:
    • 44.866325
  • left-end-position:
    • 1724049
  • right-end-position:
    • 1725023

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS06965&oldid=94702"