Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction DTDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:gene == Gene FISUC_RS12545 == * transcription-direction: ** positive * centisome-position: ** 80.33128 * left-end-position: ** 3086838 * right-end-position: *...")
 
(12 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DTDPKIN-RXN ==
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== Gene FISUC_RS12545 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 80.33128   
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* common-name:
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* left-end-position:
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** nucleoside-diphosphate kinase
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** 3086838
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== Reaction formula ==
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* right-end-position:
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* 1 [[ATP]][c] '''+''' 1 [[TDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[TTP]][c]
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** 3087614
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS14500]]
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* [[fsucgem]]
 +
== Reaction(s) associated ==
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* [[R601-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[RXN-14963]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS12530]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS15240]]
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* [[RXN-14971]]
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** Category: [[orthology]]
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** Category: [[annotation]]
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN-15378]]
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
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** Category: [[annotation]]
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** '''10''' reactions found over '''13''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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** '''6''' reactions found over '''7''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-7210]], pyrimidine deoxyribonucleotides biosynthesis from CTP:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''6''' reactions found over '''8''' reactions in the full pathway
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN]]
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* [[PWY-7197]], pyrimidine deoxyribonucleotide phosphorylation:
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** Category: [[annotation]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
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== Pathway(s) associated ==
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** '''6''' reactions found over '''9''' reactions in the full pathway
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
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* [[FERMENTATION-PWY]]
 +
** '''14''' reactions found over '''16''' reactions in the full pathway
 +
* [[P23-PWY]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P42-PWY]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[P108-PWY]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-1576]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1336]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[REDCITCYC]]
 
** '''7''' reactions found over '''9''' reactions in the full pathway
 
** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-7198]], pyrimidine deoxyribonucleotides de novo biosynthesis IV:
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* [[PWY0-1582]]
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** '''5''' reactions found over '''7''' reactions in the full pathway
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** '''1''' reactions found over '''2''' reactions in the full pathway
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== Reconstruction information  ==
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* [[PWY-7384]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[PWY-561]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** '''6''' reactions found over '''4''' reactions in the full pathway
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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* [[TCA]]
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== External links  ==
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* RHEA:
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* [[PWY-7254]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=27683 27683]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* LIGAND-RXN:
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* [[PWY-5690]]
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** [http://www.genome.jp/dbget-bin/www_bget?R02093 R02093]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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{{#set: ec-number=ec-2.7.4.6}}
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* [[PWY-6969]]
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{{#set: direction=left-to-right}}
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** '''9''' reactions found over '''12''' reactions in the full pathway
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{{#set: common-name=nucleoside-diphosphate kinase}}
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* [[P105-PWY]]
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{{#set: nb gene associated=3}}
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** '''8''' reactions found over '''11''' reactions in the full pathway
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{{#set: nb pathway associated=7}}
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* [[PWY-6728]]
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{{#set: reconstruction category=annotation|orthology}}
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** '''9''' reactions found over '''19''' reactions in the full pathway
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
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* [[PWY-3781]]
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{{#set: reconstruction comment=n.a}}
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** '''2''' reactions found over '''4''' reactions in the full pathway
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{{#set: reconstruction source=genome|plantarum|bthetaiotaomicron|ecoli}}
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* [[PWY0-1353]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1329]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7279]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-4302]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-398]]
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** '''7''' reactions found over '''11''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: centisome-position=80.33128    }}
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{{#set: left-end-position=3086838}}
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{{#set: right-end-position=3087614}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=23}}

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12545

  • transcription-direction:
    • positive
  • centisome-position:
    • 80.33128
  • left-end-position:
    • 3086838
  • right-end-position:
    • 3087614

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-1576
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1336
    • 1 reactions found over 2 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY0-1582
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-3781
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-4302
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12545&oldid=94704"