Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction ACONITATEDEHYDR-RXN == * direction: ** reversible * common-name: ** aconitate hydratase == Reaction formula == * 1 CIT[c] '''<=>''' 1 C...")
(Created page with "Category:gene == Gene FISUC_RS12545 == * transcription-direction: ** positive * centisome-position: ** 80.33128 * left-end-position: ** 3086838 * right-end-position: *...")
 
(11 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
+
[[Category:gene]]
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== Reaction ACONITATEDEHYDR-RXN ==
+
== Gene FISUC_RS12545 ==
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* direction:
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* transcription-direction:
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** reversible
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** positive
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* common-name:
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* centisome-position:
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** aconitate hydratase
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** 80.33128   
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== Reaction formula ==
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* left-end-position:
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* 1 [[CIT]][c] '''<=>''' 1 [[CIS-ACONITATE]][c] '''+''' 1 [[WATER]][c]
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** 3086838
−
== Gene(s) associated with this reaction  ==
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* right-end-position:
−
* Gene: [[FISUC_RS00920]]
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** 3087614
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[R601-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS02800]]
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* [[RXN-14963]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
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* [[RXN-14971]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** Category: [[annotation]]
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-15378]]
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== Pathway(s) ==
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[GLYOXYLATE-BYPASS]], glyoxylate cycle:
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* [[FERMENTATION-PWY]]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
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** '''14''' reactions found over '''16''' reactions in the full pathway
−
* [[PWY-6549]], L-glutamine biosynthesis III:
+
* [[P23-PWY]]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* [[PWY-6728]], methylaspartate cycle:
+
* [[P42-PWY]]
−
** '''9''' reactions found over '''19''' reactions in the full pathway
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
* [[P23-PWY]], reductive TCA cycle I:
+
* [[PWY-5392]]
−
** '''9''' reactions found over '''12''' reactions in the full pathway
 
−
* [[PWY-7124]], ethylene biosynthesis V (engineered):
 
−
** '''7''' reactions found over '''8''' reactions in the full pathway
 
−
* [[PWY-5392]], reductive TCA cycle II:
 
 
** '''8''' reactions found over '''12''' reactions in the full pathway
 
** '''8''' reactions found over '''12''' reactions in the full pathway
−
* [[TCA]], TCA cycle I (prokaryotic):
+
* [[P108-PWY]]
−
** '''9''' reactions found over '''10''' reactions in the full pathway
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
* [[PWY-7254]], TCA cycle VII (acetate-producers):
+
* [[PWY0-1576]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1336]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[REDCITCYC]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-1582]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7384]]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-561]]
 +
** '''6''' reactions found over '''4''' reactions in the full pathway
 +
* [[TCA]]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]]
 
** '''8''' reactions found over '''9''' reactions in the full pathway
 
** '''8''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5690]], TCA cycle II (plants and fungi):
+
* [[PWY-6969]]
−
** '''8''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY66-398]], TCA cycle III (animals):
 
−
** '''8''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-5913]], partial TCA cycle (obligate autotrophs):
 
−
** '''9''' reactions found over '''11''' reactions in the full pathway
 
−
* [[REDCITCYC]], TCA cycle VIII (Helicobacter):
 
−
** '''7''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6969]], TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase):
 
 
** '''9''' reactions found over '''12''' reactions in the full pathway
 
** '''9''' reactions found over '''12''' reactions in the full pathway
−
* [[P105-PWY]], TCA cycle IV (2-oxoglutarate decarboxylase):
+
* [[P105-PWY]]
 
** '''8''' reactions found over '''11''' reactions in the full pathway
 
** '''8''' reactions found over '''11''' reactions in the full pathway
−
* [[FERMENTATION-PWY]], mixed acid fermentation:
+
* [[PWY-6728]]
−
** '''14''' reactions found over '''16''' reactions in the full pathway
+
** '''9''' reactions found over '''19''' reactions in the full pathway
−
</div>
+
* [[PWY-3781]]
−
== Reconstruction information  ==
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
* [[PWY0-1353]]
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* [[PWY0-1329]]
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** '''1''' reactions found over '''2''' reactions in the full pathway
−
== External links  ==
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* [[PWY-7279]]
−
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* RHEA:
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* [[PWY-4302]]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10231 10231]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* PIR:
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* [[PWY66-398]]
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A35544 A35544]
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44153 A44153]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A44154 A44154]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A47184 A47184]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=A81801 A81801]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=B48642 B48642]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64362 C64362]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C64617 C64617]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=C81356 C81356]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F64734 F64734]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=F70873 F70873]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G64875 G64875]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G69599 G69599]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=G86708 G86708]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=H81775 H81775]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S17526 S17526]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S18720 S18720]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S26403 S26403]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S49849 S49849]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S50387 S50387]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57528 S57528]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S57805 S57805]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=S76777 S76777]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04693 T04693]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T04820 T04820]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T07611 T07611]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T10101 T10101]
 
−
** [http://pir.georgetown.edu/cgi-bin/nbrfget?uid=T52543 T52543]
 
−
* UNIPROT:
 
−
** [http://www.uniprot.org/uniprot/P16276 P16276]
 
−
** [http://www.uniprot.org/uniprot/Q01059 Q01059]
 
−
** [http://www.uniprot.org/uniprot/Q9TSA1 Q9TSA1]
 
−
** [http://www.uniprot.org/uniprot/Q9JTI5 Q9JTI5]
 
−
** [http://www.uniprot.org/uniprot/P37032 P37032]
 
−
** [http://www.uniprot.org/uniprot/P81291 P81291]
 
−
** [http://www.uniprot.org/uniprot/Q9PP88 Q9PP88]
 
−
** [http://www.uniprot.org/uniprot/P36683 P36683]
 
−
** [http://www.uniprot.org/uniprot/O53166 O53166]
 
−
** [http://www.uniprot.org/uniprot/P25516 P25516]
 
−
** [http://www.uniprot.org/uniprot/P09339 P09339]
 
−
** [http://www.uniprot.org/uniprot/Q9CHQ5 Q9CHQ5]
 
−
** [http://www.uniprot.org/uniprot/Q9JT05 Q9JT05]
 
−
** [http://www.uniprot.org/uniprot/Q99798 Q99798]
 
−
** [http://www.uniprot.org/uniprot/P28271 P28271]
 
−
** [http://www.uniprot.org/uniprot/P21399 P21399]
 
−
** [http://www.uniprot.org/uniprot/Q42669 Q42669]
 
−
** [http://www.uniprot.org/uniprot/P19414 P19414]
 
−
** [http://www.uniprot.org/uniprot/P20004 P20004]
 
−
** [http://www.uniprot.org/uniprot/P49609 P49609]
 
−
** [http://www.uniprot.org/uniprot/P74582 P74582]
 
−
** [http://www.uniprot.org/uniprot/Q42560 Q42560]
 
−
** [http://www.uniprot.org/uniprot/Q9SZ36 Q9SZ36]
 
−
** [http://www.uniprot.org/uniprot/O04916 O04916]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R01325 R01325]
 
 
</div>
 
</div>
−
{{#set: direction=reversible}}
+
{{#set: transcription-direction=positive}}
−
{{#set: common-name=aconitate hydratase}}
+
{{#set: centisome-position=80.33128    }}
−
{{#set: nb gene associated=2}}
+
{{#set: left-end-position=3086838}}
−
{{#set: nb pathway associated=15}}
+
{{#set: right-end-position=3087614}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
+
{{#set: nb reaction associated=6}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb pathway associated=23}}
−
{{#set: reconstruction source=ecoli|bifidobacterium|genome|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12545

  • transcription-direction:
    • positive
  • centisome-position:
    • 80.33128
  • left-end-position:
    • 3086838
  • right-end-position:
    • 3087614

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-1576
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1336
    • 1 reactions found over 2 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY0-1582
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-3781
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-4302
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12545&oldid=94704"