Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction TRYPSYN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20] * direction: ** left-to-right == Reaction formula == * 1 ...")
(Created page with "Category:gene == Gene FISUC_RS12545 == * transcription-direction: ** positive * centisome-position: ** 80.33128 * left-end-position: ** 3086838 * right-end-position: *...")
 
(8 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction TRYPSYN-RXN ==
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== Gene FISUC_RS12545 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.2.1.20 ec-4.2.1.20]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 80.33128   
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== Reaction formula ==
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* left-end-position:
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* 1 [[INDOLE-3-GLYCEROL-P]][c] '''+''' 1 [[SER]][c] '''=>''' 1 [[GAP]][c] '''+''' 1 [[TRP]][c] '''+''' 1 [[WATER]][c]
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** 3086838
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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** 3087614
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* Gene: [[FISUC_RS00910]]
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== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[R601-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14963]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-14971]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS02795]]
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* [[RXN-15378]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
* Gene: [[FISUC_RS00915]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS02790]]
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
== Pathway(s) associated ==
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
−
</div>
 
−
== Pathway(s)  ==
 
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* RHEA:
+
* [[FERMENTATION-PWY]]
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10533 10533]
+
** '''14''' reactions found over '''16''' reactions in the full pathway
−
* LIGAND-RXN:
+
* [[P23-PWY]]
−
** [http://www.genome.jp/dbget-bin/www_bget?R02722 R02722]
+
** '''11''' reactions found over '''12''' reactions in the full pathway
−
* UNIPROT:
+
* [[P42-PWY]]
−
** [http://www.uniprot.org/uniprot/P11081 P11081]
+
** '''7''' reactions found over '''7''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P14671 P14671]
+
* [[PWY-5392]]
−
** [http://www.uniprot.org/uniprot/P13228 P13228]
+
** '''8''' reactions found over '''12''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P18284 P18284]
+
* [[P108-PWY]]
−
** [http://www.uniprot.org/uniprot/P43759 P43759]
+
** '''4''' reactions found over '''7''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O84172 O84172]
+
* [[PWY0-1576]]
−
** [http://www.uniprot.org/uniprot/P11080 P11080]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P16608 P16608]
+
* [[PWY0-1336]]
−
** [http://www.uniprot.org/uniprot/P18285 P18285]
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** '''1''' reactions found over '''2''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P16706 P16706]
+
* [[REDCITCYC]]
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** [http://www.uniprot.org/uniprot/P12290 P12290]
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** '''7''' reactions found over '''9''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P42391 P42391]
+
* [[PWY0-1582]]
−
** [http://www.uniprot.org/uniprot/Q9PIF2 Q9PIF2]
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** '''1''' reactions found over '''2''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P12291 P12291]
+
* [[PWY-7384]]
−
** [http://www.uniprot.org/uniprot/P42389 P42389]
+
** '''8''' reactions found over '''10''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q60179 Q60179]
+
* [[PWY-561]]
−
** [http://www.uniprot.org/uniprot/Q9PIF1 Q9PIF1]
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** '''6''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P07600 P07600]
+
* [[TCA]]
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** [http://www.uniprot.org/uniprot/P07601 P07601]
+
** '''10''' reactions found over '''10''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P06561 P06561]
+
* [[PWY-7254]]
−
** [http://www.uniprot.org/uniprot/P56142 P56142]
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** '''9''' reactions found over '''9''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P06562 P06562]
+
* [[PWY-5690]]
−
** [http://www.uniprot.org/uniprot/O27696 O27696]
+
** '''8''' reactions found over '''9''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/O28672 O28672]
+
* [[PWY-6969]]
−
** [http://www.uniprot.org/uniprot/O66923 O66923]
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** '''9''' reactions found over '''12''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q9JVC0 Q9JVC0]
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* [[P105-PWY]]
−
** [http://www.uniprot.org/uniprot/P43760 P43760]
+
** '''8''' reactions found over '''11''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P34817 P34817]
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* [[PWY-6728]]
−
** [http://www.uniprot.org/uniprot/P34816 P34816]
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** '''9''' reactions found over '''19''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P17167 P17167]
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* [[PWY-3781]]
−
** [http://www.uniprot.org/uniprot/P17166 P17166]
+
** '''2''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P19868 P19868]
+
* [[PWY0-1353]]
−
** [http://www.uniprot.org/uniprot/P19867 P19867]
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** '''1''' reactions found over '''2''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P16578 P16578]
+
* [[PWY0-1329]]
−
** [http://www.uniprot.org/uniprot/P43283 P43283]
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P43284 P43284]
+
* [[PWY-7279]]
−
** [http://www.uniprot.org/uniprot/Q57011 Q57011]
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P31204 P31204]
+
* [[PWY-4302]]
−
** [http://www.uniprot.org/uniprot/Q01998 Q01998]
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/Q01997 Q01997]
+
* [[PWY66-398]]
−
** [http://www.uniprot.org/uniprot/P34793 P34793]
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
** [http://www.uniprot.org/uniprot/P42390 P42390]
 
−
** [http://www.uniprot.org/uniprot/P50909 P50909]
 
−
** [http://www.uniprot.org/uniprot/Q42529 Q42529]
 
−
** [http://www.uniprot.org/uniprot/P51382 P51382]
 
−
** [http://www.uniprot.org/uniprot/P77960 P77960]
 
−
** [http://www.uniprot.org/uniprot/Q59992 Q59992]
 
−
** [http://www.uniprot.org/uniprot/O22765 O22765]
 
−
** [http://www.uniprot.org/uniprot/O04225 O04225]
 
−
** [http://www.uniprot.org/uniprot/P25269 P25269]
 
−
** [http://www.uniprot.org/uniprot/O64991 O64991]
 
−
** [http://www.uniprot.org/uniprot/O05625 O05625]
 
−
** [http://www.uniprot.org/uniprot/O13831 O13831]
 
−
** [http://www.uniprot.org/uniprot/Q9YGB0 Q9YGB0]
 
−
** [http://www.uniprot.org/uniprot/Q9YGA9 Q9YGA9]
 
−
** [http://www.uniprot.org/uniprot/Q9X7C8 Q9X7C8]
 
−
** [http://www.uniprot.org/uniprot/P00931 P00931]
 
−
** [http://www.uniprot.org/uniprot/P00929 P00929]
 
−
** [http://www.uniprot.org/uniprot/P0A2K1 P0A2K1]
 
−
** [http://www.uniprot.org/uniprot/P0A877 P0A877]
 
−
** [http://www.uniprot.org/uniprot/P0A879 P0A879]
 
 
</div>
 
</div>
−
{{#set: ec-number=ec-4.2.1.20}}
+
{{#set: transcription-direction=positive}}
−
{{#set: direction=left-to-right}}
+
{{#set: centisome-position=80.33128    }}
−
{{#set: nb gene associated=4}}
+
{{#set: left-end-position=3086838}}
−
{{#set: nb pathway associated=0}}
+
{{#set: right-end-position=3087614}}
−
{{#set: reconstruction category=orthology|annotation}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction tool=pathwaytools|orthofinder}}
+
{{#set: nb reaction associated=6}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb pathway associated=23}}
−
{{#set: reconstruction source=ecoli|bthetaiotaomicron|plantarum|genome|bifidobacterium}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12545

  • transcription-direction:
    • positive
  • centisome-position:
    • 80.33128
  • left-end-position:
    • 3086838
  • right-end-position:
    • 3087614

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-1576
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1336
    • 1 reactions found over 2 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY0-1582
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-3781
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-4302
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12545&oldid=94704"