Difference between revisions of "FISUC RS12545"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction 2-DEHYDROPANTOATE-REDUCT-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.1.1.169 ec-1.1.1.169] * direction: ** left-to-right * common-n...")
(Created page with "Category:gene == Gene FISUC_RS12545 == * transcription-direction: ** positive * centisome-position: ** 80.33128 * left-end-position: ** 3086838 * right-end-position: *...")
 
(5 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction 2-DEHYDROPANTOATE-REDUCT-RXN ==
+
== Gene FISUC_RS12545 ==
−
* ec-number:
+
* transcription-direction:
−
** [http://enzyme.expasy.org/EC/1.1.1.169 ec-1.1.1.169]
+
** positive
−
* direction:
+
* centisome-position:
−
** left-to-right
+
** 80.33128   
−
* common-name:
+
* left-end-position:
−
** 2-dehydropantoate 2-reductase
+
** 3086838
−
== Reaction formula ==
+
* right-end-position:
−
* 1 [[2-DEHYDROPANTOATE]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[L-PANTOATE]][c] '''+''' 1 [[NADP]][c]
+
** 3087614
−
== Gene(s) associated with this reaction  ==
+
== Organism(s) associated with this gene  ==
−
* Gene: [[FSU_RS06490]]
+
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[R601-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FISUC_RS04600]]
+
* [[RXN-14963]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
* Gene: [[FSU_RS03445]]
+
* [[RXN-14971]]
−
** Category: [[orthology]]
+
** Category: [[annotation]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[RXN-15378]]
−
== Pathway(s) ==
+
** Category: [[annotation]]
−
* [[PWY-6654]], phosphopantothenate biosynthesis III (archaebacteria):
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 +
* [[FERMENTATION-PWY]]
 +
** '''14''' reactions found over '''16''' reactions in the full pathway
 +
* [[P23-PWY]]
 +
** '''11''' reactions found over '''12''' reactions in the full pathway
 +
* [[P42-PWY]]
 +
** '''7''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY-5392]]
 +
** '''8''' reactions found over '''12''' reactions in the full pathway
 +
* [[P108-PWY]]
 +
** '''4''' reactions found over '''7''' reactions in the full pathway
 +
* [[PWY0-1576]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY0-1336]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[REDCITCYC]]
 +
** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY0-1582]]
 +
** '''1''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7384]]
 +
** '''8''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-561]]
 +
** '''6''' reactions found over '''4''' reactions in the full pathway
 +
* [[TCA]]
 +
** '''10''' reactions found over '''10''' reactions in the full pathway
 +
* [[PWY-7254]]
 +
** '''9''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5690]]
 +
** '''8''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6969]]
 +
** '''9''' reactions found over '''12''' reactions in the full pathway
 +
* [[P105-PWY]]
 +
** '''8''' reactions found over '''11''' reactions in the full pathway
 +
* [[PWY-6728]]
 +
** '''9''' reactions found over '''19''' reactions in the full pathway
 +
* [[PWY-3781]]
 
** '''2''' reactions found over '''4''' reactions in the full pathway
 
** '''2''' reactions found over '''4''' reactions in the full pathway
−
* [[PANTO-PWY]], phosphopantothenate biosynthesis I:
+
* [[PWY0-1353]]
−
** '''4''' reactions found over '''4''' reactions in the full pathway
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
== Reconstruction information  ==
+
* [[PWY0-1329]]
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
+
** '''1''' reactions found over '''2''' reactions in the full pathway
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
+
* [[PWY-7279]]
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
+
** '''1''' reactions found over '''4''' reactions in the full pathway
−
== External links  ==
+
* [[PWY-4302]]
−
* RHEA:
+
** '''2''' reactions found over '''3''' reactions in the full pathway
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=16235 16235]
+
* [[PWY66-398]]
−
* LIGAND-RXN:
+
** '''7''' reactions found over '''11''' reactions in the full pathway
−
** [http://www.genome.jp/dbget-bin/www_bget?R02472 R02472]
+
</div>
−
* UNIPROT:
+
{{#set: transcription-direction=positive}}
−
** [http://www.uniprot.org/uniprot/Q9CFY8 Q9CFY8]
+
{{#set: centisome-position=80.33128    }}
−
** [http://www.uniprot.org/uniprot/Q9V0N0 Q9V0N0]
+
{{#set: left-end-position=3086838}}
−
{{#set: ec-number=ec-1.1.1.169}}
+
{{#set: right-end-position=3087614}}
−
{{#set: direction=left-to-right}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: common-name=2-dehydropantoate 2-reductase}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb gene associated=3}}
+
{{#set: nb pathway associated=23}}
−
{{#set: nb pathway associated=2}}
 
−
{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12545

  • transcription-direction:
    • positive
  • centisome-position:
    • 80.33128
  • left-end-position:
    • 3086838
  • right-end-position:
    • 3087614

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-1576
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1336
    • 1 reactions found over 2 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY0-1582
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-3781
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-4302
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12545&oldid=94704"