Difference between revisions of "FISUC RS12545"

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(Created page with "Category:reaction == Reaction MHPCHYDROL-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.7.1.14 ec-3.7.1.14] * direction: ** left-to-right == Reaction formula == * 1...")
(Created page with "Category:gene == Gene FISUC_RS12545 == * transcription-direction: ** positive * centisome-position: ** 80.33128 * left-end-position: ** 3086838 * right-end-position: *...")
 
(3 intermediate revisions by 2 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction MHPCHYDROL-RXN ==
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== Gene FISUC_RS12545 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/3.7.1.14 ec-3.7.1.14]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 80.33128   
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== Reaction formula ==
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* left-end-position:
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* 1 [[CPD-157]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[CPD-14447]][c] '''+''' 1 [[PROTON]][c] '''+''' 1 [[SUC]][c]
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** 3086838
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FSU_RS14150]]
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** 3087614
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** Category: [[manual]]
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== Organism(s) associated with this gene  ==
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*** Source: [[reactions_add_43_emile_ortho_meta]], Tool: [[unknown-tool]], Assignment: n.a, Comment: present in the orthology part of the emile network.
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* [[fsucgem]]
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== Pathway(s)  ==
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== Reaction(s) associated ==
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* [[HCAMHPDEG-PWY]], 3-phenylpropanoate and 3-(3-hydroxyphenyl)propanoate degradation to 2-hydroxypentadienoate:
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* [[R601-RXN]]
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** '''1''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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== Reconstruction information  ==
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[manual]]; source: [[reactions_add_43_emile_ortho_meta]]; tool: [[curation]]; comment: present in the orthology part of the emile network.
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* [[RXN-14963]]
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== External links  ==
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** Category: [[annotation]]
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* LIGAND-RXN:
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.genome.jp/dbget-bin/www_bget?R02603 R02603]
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* [[RXN-14971]]
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{{#set: ec-number=ec-3.7.1.14}}
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** Category: [[annotation]]
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{{#set: direction=left-to-right}}
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb gene associated=1}}
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* [[RXN-15378]]
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{{#set: nb pathway associated=1}}
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** Category: [[annotation]]
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{{#set: reconstruction category=manual}}
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction tool=curation}}
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE-RXN]]
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{{#set: reconstruction comment=present in the orthology part of the emile network.}}
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** Category: [[annotation]]
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{{#set: reconstruction source=reactions_add_43_emile_ortho_meta}}
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* [[SUCCINATE-DEHYDROGENASE-UBIQUINONE6-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[FERMENTATION-PWY]]
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** '''14''' reactions found over '''16''' reactions in the full pathway
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* [[P23-PWY]]
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** '''11''' reactions found over '''12''' reactions in the full pathway
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* [[P42-PWY]]
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** '''7''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-5392]]
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** '''8''' reactions found over '''12''' reactions in the full pathway
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* [[P108-PWY]]
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** '''4''' reactions found over '''7''' reactions in the full pathway
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* [[PWY0-1576]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1336]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[REDCITCYC]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
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* [[PWY0-1582]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7384]]
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** '''8''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-561]]
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** '''6''' reactions found over '''4''' reactions in the full pathway
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* [[TCA]]
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** '''10''' reactions found over '''10''' reactions in the full pathway
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* [[PWY-7254]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-5690]]
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** '''8''' reactions found over '''9''' reactions in the full pathway
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* [[PWY-6969]]
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** '''9''' reactions found over '''12''' reactions in the full pathway
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* [[P105-PWY]]
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** '''8''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-6728]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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* [[PWY-3781]]
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** '''2''' reactions found over '''4''' reactions in the full pathway
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* [[PWY0-1353]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY0-1329]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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* [[PWY-7279]]
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** '''1''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-4302]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[PWY66-398]]
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** '''7''' reactions found over '''11''' reactions in the full pathway
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</div>
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{{#set: transcription-direction=positive}}
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{{#set: centisome-position=80.33128    }}
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{{#set: left-end-position=3086838}}
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{{#set: right-end-position=3087614}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=6}}
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{{#set: nb pathway associated=23}}

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12545

  • transcription-direction:
    • positive
  • centisome-position:
    • 80.33128
  • left-end-position:
    • 3086838
  • right-end-position:
    • 3087614

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • FERMENTATION-PWY
    • 14 reactions found over 16 reactions in the full pathway
  • P23-PWY
    • 11 reactions found over 12 reactions in the full pathway
  • P42-PWY
    • 7 reactions found over 7 reactions in the full pathway
  • PWY-5392
    • 8 reactions found over 12 reactions in the full pathway
  • P108-PWY
    • 4 reactions found over 7 reactions in the full pathway
  • PWY0-1576
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1336
    • 1 reactions found over 2 reactions in the full pathway
  • REDCITCYC
    • 7 reactions found over 9 reactions in the full pathway
  • PWY0-1582
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7384
    • 8 reactions found over 10 reactions in the full pathway
  • PWY-561
    • 6 reactions found over 4 reactions in the full pathway
  • TCA
    • 10 reactions found over 10 reactions in the full pathway
  • PWY-7254
    • 9 reactions found over 9 reactions in the full pathway
  • PWY-5690
    • 8 reactions found over 9 reactions in the full pathway
  • PWY-6969
    • 9 reactions found over 12 reactions in the full pathway
  • P105-PWY
    • 8 reactions found over 11 reactions in the full pathway
  • PWY-6728
    • 9 reactions found over 19 reactions in the full pathway
  • PWY-3781
    • 2 reactions found over 4 reactions in the full pathway
  • PWY0-1353
    • 1 reactions found over 2 reactions in the full pathway
  • PWY0-1329
    • 1 reactions found over 2 reactions in the full pathway
  • PWY-7279
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-4302
    • 2 reactions found over 3 reactions in the full pathway
  • PWY66-398
    • 7 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12545&oldid=94704"