|
|
| (12 intermediate revisions by 3 users not shown) |
| Line 1: |
Line 1: |
| − | [[Category:reaction]] | + | [[Category:gene]] |
| − | == Reaction PYRUVFORMLY-RXN == | + | == Gene FSU_RS11010 == |
| − | * ec-number:
| + | == Organism(s) associated with this gene == |
| − | ** [http://enzyme.expasy.org/EC/2.3.1.54 ec-2.3.1.54]
| + | * [[fsucgem]] |
| − | * direction:
| + | == Reaction(s) associated == |
| − | ** reversible
| + | * [[GLUTAMATESYN-RXN]] |
| − | * common-name:
| |
| − | ** formate c-acetyltransferase
| |
| − | == Reaction formula == | |
| − | * 1 [[ACETYL-COA]][c] '''+''' 1 [[FORMATE]][c] '''<=>''' 1 [[CO-A]][c] '''+''' 1 [[PYRUVATE]][c] | |
| − | == Gene(s) associated with this reaction == | |
| − | * Gene: [[FISUC_RS05215]] | |
| − | ** Category: [[annotation]]
| |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| |
| − | * Gene: [[FSU_RS07120]]
| |
| | ** Category: [[orthology]] | | ** Category: [[orthology]] |
| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a |
| − | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | *** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a |
| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a | + | == Pathway(s) associated == |
| − | * Gene: [[FSU_RS07105]] | + | * [[GLUTSYN-PWY]] |
| − | ** Category: [[annotation]] | + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
| − | *** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
| + | * [[GLUTAMINEFUM-PWY]] |
| − | ** Category: [[orthology]]
| + | ** '''1''' reactions found over '''1''' reactions in the full pathway |
| − | *** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: organism associated=fsucgem}} |
| − | *** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: nb reaction associated=1}} |
| − | *** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| + | {{#set: nb pathway associated=2}} |
| − | *** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | *** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
| |
| − | == Pathway(s) == | |
| − | * [[PWY-5485]], pyruvate fermentation to acetate IV: | |
| − | ** '''4''' reactions found over '''3''' reactions in the full pathway
| |
| − | * [[PWY-5480]], pyruvate fermentation to ethanol I:
| |
| − | ** '''3''' reactions found over '''3''' reactions in the full pathway | |
| − | * [[PWY-5493]], reductive monocarboxylic acid cycle: | |
| − | ** '''2''' reactions found over '''2''' reactions in the full pathway
| |
| − | * [[PWY4LZ-257]], superpathway of fermentation (Chlamydomonas reinhardtii):
| |
| − | ** '''9''' reactions found over '''7''' reactions in the full pathway
| |
| − | * [[FERMENTATION-PWY]], mixed acid fermentation:
| |
| − | ** '''14''' reactions found over '''16''' reactions in the full pathway | |
| − | == Reconstruction information ==
| |
| − | * category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
| |
| − | * category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
| |
| − | == External links ==
| |
| − | * RHEA:
| |
| − | ** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=11847 11847]
| |
| − | * LIGAND-RXN:
| |
| − | ** [http://www.genome.jp/dbget-bin/www_bget?R00212 R00212]
| |
| − | * UNIPROT:
| |
| − | ** [http://www.uniprot.org/uniprot/P32674 P32674]
| |
| − | ** [http://www.uniprot.org/uniprot/O26446 O26446]
| |
| − | ** [http://www.uniprot.org/uniprot/P75793 P75793]
| |
| − | ** [http://www.uniprot.org/uniprot/P42632 P42632]
| |
| − | ** [http://www.uniprot.org/uniprot/O28823 O28823]
| |
| − | ** [http://www.uniprot.org/uniprot/O32797 O32797]
| |
| − | ** [http://www.uniprot.org/uniprot/Q46266 Q46266]
| |
| − | ** [http://www.uniprot.org/uniprot/P09373 P09373]
| |
| − | ** [http://www.uniprot.org/uniprot/P37836 P37836]
| |
| − | {{#set: ec-number=ec-2.3.1.54}} | |
| − | {{#set: direction=reversible}}
| |
| − | {{#set: common-name=formate c-acetyltransferase}}
| |
| − | {{#set: nb gene associated=3}} | |
| − | {{#set: nb pathway associated=5}} | |
| − | {{#set: reconstruction category=annotation|orthology}}
| |
| − | {{#set: reconstruction tool=pathwaytools|orthofinder}}
| |
| − | {{#set: reconstruction comment=n.a}}
| |
| − | {{#set: reconstruction source=bifidobacterium|bthetaiotaomicron|ecoli|genome|faecalibacterium|plantarum}}
| |
