Difference between revisions of "FISUC RS06860"

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(Created page with "Category:reaction == Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10] * direction: ** reversible * common-na...")
(Created page with "Category:gene == Gene FISUC_RS06860 == * transcription-direction: ** negative * centisome-position: ** 44.283573 * left-end-position: ** 1701656 * right-end-position:...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction 3-DEHYDROQUINATE-DEHYDRATASE-RXN ==
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== Gene FISUC_RS06860 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/4.2.1.10 ec-4.2.1.10]
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** negative
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* direction:
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* centisome-position:
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** reversible
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** 44.283573   
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* common-name:
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* left-end-position:
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** type i 3-dehydroquinate dehydratase
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** 1701656
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== Reaction formula ==
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* right-end-position:
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* 1 [[DEHYDROQUINATE]][c] '''<=>''' 1 [[3-DEHYDRO-SHIKIMATE]][c] '''+''' 1 [[WATER]][c]
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** 1703164
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS09810]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[PHOSMANMUT-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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== Pathway(s) associated ==
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7586]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS07880]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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== Pathway(s) ==
 
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* [[PWY-6416]], quinate degradation II:
 
 
** '''2''' reactions found over '''3''' reactions in the full pathway
 
** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[QUINATEDEG-PWY]], quinate degradation I:
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* [[PWY-5659]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-6707]], gallate biosynthesis:
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* [[PWY-7456]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** '''3''' reactions found over '''7''' reactions in the full pathway
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* [[PWY-6163]], chorismate biosynthesis from 3-dehydroquinate:
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* [[PWY-882]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** '''3''' reactions found over '''8''' reactions in the full pathway
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== Reconstruction information  ==
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{{#set: transcription-direction=negative}}
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: centisome-position=44.283573    }}
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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{{#set: left-end-position=1701656}}
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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{{#set: right-end-position=1703164}}
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== External links  ==
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{{#set: organism associated=fsucgem}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: nb reaction associated=1}}
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=21099 21099]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03084 R03084]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P05195 P05195]
 
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** [http://www.uniprot.org/uniprot/P46380 P46380]
 
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** [http://www.uniprot.org/uniprot/Q9CF39 Q9CF39]
 
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** [http://www.uniprot.org/uniprot/P07547 P07547]
 
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** [http://www.uniprot.org/uniprot/P08566 P08566]
 
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** [http://www.uniprot.org/uniprot/P43878 P43878]
 
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** [http://www.uniprot.org/uniprot/P05194 P05194]
 
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** [http://www.uniprot.org/uniprot/Q58849 Q58849]
 
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** [http://www.uniprot.org/uniprot/P0A4Z6 P0A4Z6]
 
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** [http://www.uniprot.org/uniprot/Q9PJ53 Q9PJ53]
 
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** [http://www.uniprot.org/uniprot/P05147 P05147]
 
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** [http://www.uniprot.org/uniprot/P24670 P24670]
 
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** [http://www.uniprot.org/uniprot/P35146 P35146]
 
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** [http://www.uniprot.org/uniprot/Q42947 Q42947]
 
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** [http://www.uniprot.org/uniprot/Q48255 Q48255]
 
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** [http://www.uniprot.org/uniprot/P73367 P73367]
 
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** [http://www.uniprot.org/uniprot/O65917 O65917]
 
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</div>
 
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{{#set: ec-number=ec-4.2.1.10}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=type i 3-dehydroquinate dehydratase}}
 
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{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=genome|ecoli|plantarum}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS06860

  • transcription-direction:
    • negative
  • centisome-position:
    • 44.283573
  • left-end-position:
    • 1701656
  • right-end-position:
    • 1703164

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7586
    • 2 reactions found over 3 reactions in the full pathway
  • PWY-5659
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-7456
    • 3 reactions found over 7 reactions in the full pathway
  • PWY-882
    • 3 reactions found over 8 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS06860&oldid=94715"