Difference between revisions of "FISUC RS12340"

From metabolic_network
Jump to navigation Jump to search
(Created page with "Category:reaction == Reaction DUDPKIN-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6] * direction: ** left-to-right * common-name: ** nucleoside-di...")
(Created page with "Category:gene == Gene FISUC_RS12340 == * common-name: ** guab * transcription-direction: ** positive * centisome-position: ** 78.84126 * left-end-position: ** 3029582...")
 
(11 intermediate revisions by 3 users not shown)
Line 1: Line 1:
−
[[Category:reaction]]
+
[[Category:gene]]
−
== Reaction DUDPKIN-RXN ==
+
== Gene FISUC_RS12340 ==
−
* ec-number:
 
−
** [http://enzyme.expasy.org/EC/2.7.4.6 ec-2.7.4.6]
 
−
* direction:
 
−
** left-to-right
 
 
* common-name:
 
* common-name:
−
** nucleoside-diphosphate kinase
+
** guab
−
== Reaction formula ==
+
* transcription-direction:
−
* 1 [[ATP]][c] '''+''' 1 [[DUDP]][c] '''=>''' 1 [[ADP]][c] '''+''' 1 [[DUTP]][c]
+
** positive
−
== Gene(s) associated with this reaction ==
+
* centisome-position:
−
* Gene: [[FSU_RS15240]]
+
** 78.84126   
−
** Category: [[orthology]]
+
* left-end-position:
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** 3029582
−
* Gene: [[FSU_RS14500]]
+
* right-end-position:
 +
** 3031039
 +
== Organism(s) associated with this gene ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[IMP-DEHYDROG-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
−
** Category: [[orthology]]
+
== Pathway(s) associated ==
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[PWY-5695]]
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
** '''3''' reactions found over '''4''' reactions in the full pathway
−
*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
* [[PWY-7221]]
−
* Gene: [[FISUC_RS12530]]
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
** Category: [[annotation]]
+
* [[PWY-6596]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
+
** '''3''' reactions found over '''8''' reactions in the full pathway
−
== Pathway(s) ==
+
{{#set: common-name=guab}}
−
* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
+
{{#set: transcription-direction=positive}}
−
** '''10''' reactions found over '''13''' reactions in the full pathway
+
{{#set: centisome-position=78.84126    }}
−
* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
+
{{#set: left-end-position=3029582}}
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
{{#set: right-end-position=3031039}}
−
* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
+
{{#set: organism associated=fsucgem}}
−
** '''7''' reactions found over '''9''' reactions in the full pathway
+
{{#set: nb reaction associated=1}}
−
== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
== External links  ==
 
−
* RHEA:
 
−
** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=28583 28583]
 
−
* LIGAND-RXN:
 
−
** [http://www.genome.jp/dbget-bin/www_bget?R02331 R02331]
 
−
{{#set: ec-number=ec-2.7.4.6}}
 
−
{{#set: direction=left-to-right}}
 
−
{{#set: common-name=nucleoside-diphosphate kinase}}
 
−
{{#set: nb gene associated=3}}
 
 
{{#set: nb pathway associated=3}}
 
{{#set: nb pathway associated=3}}
−
{{#set: reconstruction category=orthology|annotation}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=ecoli|plantarum|genome|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS12340

  • common-name:
    • guab
  • transcription-direction:
    • positive
  • centisome-position:
    • 78.84126
  • left-end-position:
    • 3029582
  • right-end-position:
    • 3031039

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5695
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-7221
    • 4 reactions found over 4 reactions in the full pathway
  • PWY-6596
    • 3 reactions found over 8 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS12340&oldid=94716"