Difference between revisions of "FISUC RS02300"

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(Created page with "Category:reaction == Reaction GLUTSEMIALDEHYDROG-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41] * direction: ** left-to-right * common-name: **...")
 
(Created page with "Category:gene == Gene FISUC_RS02300 == * common-name: ** args * transcription-direction: ** positive * centisome-position: ** 13.856742 * left-end-position: ** 532464...")
 
(13 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction GLUTSEMIALDEHYDROG-RXN ==
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== Gene FISUC_RS02300 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/1.2.1.41 ec-1.2.1.41]
 
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* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** glutamate-5-semialdehyde dehydrogenase
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** args
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== Reaction formula ==
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* transcription-direction:
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* 1 [[L-GLUTAMATE-5-P]][c] '''+''' 1 [[NADPH]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[L-GLUTAMATE_GAMMA-SEMIALDEHYDE]][c] '''+''' 1 [[NADP]][c] '''+''' 1 [[Pi]][c]
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** positive
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FISUC_RS15310]]
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** 13.856742   
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* left-end-position:
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** 532464
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* right-end-position:
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** 534176
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== Organism(s) associated with this gene  ==
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[ARGININE--TRNA-LIGASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS01505]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
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* [[TRNA-CHARGING-PWY]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** '''21''' reactions found over '''21''' reactions in the full pathway
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** Category: [[orthology]]
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{{#set: common-name=args}}
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: transcription-direction=positive}}
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: centisome-position=13.856742    }}
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: left-end-position=532464}}
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: right-end-position=534176}}
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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{{#set: organism associated=fsucgem}}
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== Pathway(s) ==
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{{#set: nb reaction associated=1}}
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* [[CITRULBIO-PWY]], L-citrulline biosynthesis:
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{{#set: nb pathway associated=1}}
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** '''7''' reactions found over '''8''' reactions in the full pathway
 
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* [[ARGININE-SYN4-PWY]], L-ornithine biosynthesis II:
 
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** '''3''' reactions found over '''4''' reactions in the full pathway
 
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* [[PWY-6922]], L-Nδ-acetylornithine biosynthesis:
 
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** '''5''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-3341]], L-proline biosynthesis III:
 
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** '''5''' reactions found over '''5''' reactions in the full pathway
 
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* [[PROSYN-PWY]], L-proline biosynthesis I:
 
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** '''4''' reactions found over '''4''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=19543 19543]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R03313 R03313]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9JUK8 Q9JUK8]
 
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** [http://www.uniprot.org/uniprot/P45121 P45121]
 
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** [http://www.uniprot.org/uniprot/P53000 P53000]
 
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** [http://www.uniprot.org/uniprot/P07004 P07004]
 
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** [http://www.uniprot.org/uniprot/P17857 P17857]
 
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** [http://www.uniprot.org/uniprot/P45638 P45638]
 
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** [http://www.uniprot.org/uniprot/P54885 P54885]
 
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** [http://www.uniprot.org/uniprot/O04226 O04226]
 
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{{#set: ec-number=ec-1.2.1.41}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=glutamate-5-semialdehyde dehydrogenase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=orthology|annotation}}
 
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{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum|bifidobacterium|ecoli|genome|faecalibacterium|bthetaiotaomicron}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS02300

  • common-name:
    • args
  • transcription-direction:
    • positive
  • centisome-position:
    • 13.856742
  • left-end-position:
    • 532464
  • right-end-position:
    • 534176

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS02300&oldid=94718"