Difference between revisions of "FSU RS06080"

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(Created page with "Category:reaction == Reaction RXN-9531 == * common-name: ** 3-oxo-dodecanoyl-[acyl-carrier protein] synthase ** beta-ketoacyl-acp synthase ii * ec-number: ** [http://enzym...")
(Created page with "Category:gene == Gene FSU_RS06080 == * common-name: ** carb * transcription-direction: ** negative * centisome-position: ** 38.537354 * left-end-position: ** 1480992 *...")
 
(7 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-9531 ==
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== Gene FSU_RS06080 ==
 
* common-name:
 
* common-name:
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** 3-oxo-dodecanoyl-[acyl-carrier protein] synthase
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** carb
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** beta-ketoacyl-acp synthase ii
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* transcription-direction:
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* ec-number:
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** negative
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** [http://enzyme.expasy.org/EC/2.3.1.179 ec-2.3.1.179]
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* centisome-position:
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** [http://enzyme.expasy.org/EC/2.3.1.41 ec-2.3.1.41]
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** 38.537354   
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* direction:
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* left-end-position:
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** left-to-right
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** 1480992
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== Reaction formula ==
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* right-end-position:
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* 1 [[Decanoyl-ACPs]][c] '''+''' 1 [[MALONYL-ACP]][c] '''+''' 1 [[PROTON]][c] '''=>''' 1 [[3-oxo-dodecanoyl-ACPs]][c] '''+''' 1 [[ACP]][c] '''+''' 1 [[CARBON-DIOXIDE]][c]
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** 1484210
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS15410]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[CARBPSYN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS01400]]
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** Category: [[orthology]]
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 +
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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* [[GLUTAMIN-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS15210]]
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* [[RXN-13202]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS01605]]
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* [[RXN-14196]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) ==
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* [[RXN-16909]]
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* [[PWY-5971]], palmitate biosynthesis II (bacteria and plants):
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** Category: [[annotation]]
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** '''22''' reactions found over '''31''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[RXN-16910]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: common-name=beta-ketoacyl-acp synthase ii|3-oxo-dodecanoyl-[acyl-carrier protein] synthase}}
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</div>
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{{#set: ec-number=ec-2.3.1.41|ec-2.3.1.179}}
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== Pathway(s) associated ==
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{{#set: direction=left-to-right}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: nb gene associated=4}}
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* [[PWY-5686]]
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{{#set: nb pathway associated=1}}
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** '''6''' reactions found over '''6''' reactions in the full pathway
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{{#set: reconstruction category=annotation}}
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* [[PWY-7790]]
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{{#set: reconstruction tool=pathwaytools}}
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** '''6''' reactions found over '''6''' reactions in the full pathway
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{{#set: reconstruction comment=n.a}}
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* [[PWY-5154]]
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{{#set: reconstruction source=genome}}
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** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[ARGSYN-PWY]]
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** '''5''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-7400]]
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** '''7''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-7791]]
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** '''5''' reactions found over '''6''' reactions in the full pathway
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* [[ARGSYNBSUB-PWY]]
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** '''9''' reactions found over '''9''' reactions in the full pathway
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* [[PWY490-4]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5921]]
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** '''4''' reactions found over '''4''' reactions in the full pathway
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* [[CITRULBIO-PWY]]
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** '''8''' reactions found over '''8''' reactions in the full pathway
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* [[GLUTAMINDEG-PWY]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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* [[PWY-4984]]
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[PWY-7693]]
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** '''3''' reactions found over '''13''' reactions in the full pathway
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* [[PWY0-41]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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* [[CITRULLINE-DEG-PWY]]
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** '''3''' reactions found over '''3''' reactions in the full pathway
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</div>
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{{#set: common-name=carb}}
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{{#set: transcription-direction=negative}}
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{{#set: centisome-position=38.537354    }}
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{{#set: left-end-position=1480992}}
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{{#set: right-end-position=1484210}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=6}}
 +
{{#set: nb pathway associated=15}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS06080

  • common-name:
    • carb
  • transcription-direction:
    • negative
  • centisome-position:
    • 38.537354
  • left-end-position:
    • 1480992
  • right-end-position:
    • 1484210

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5154
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY
    • 5 reactions found over 4 reactions in the full pathway
  • PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY490-4
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5921
    • 4 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway
  • GLUTAMINDEG-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7693
    • 3 reactions found over 13 reactions in the full pathway
  • PWY0-41
    • 2 reactions found over 5 reactions in the full pathway
  • CITRULLINE-DEG-PWY
    • 3 reactions found over 3 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS06080&oldid=94729"