Difference between revisions of "FSU RS06080"
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(Created page with "Category:gene == Gene FSU_RS06080 == * common-name: ** carb * transcription-direction: ** negative * centisome-position: ** 38.537354 * left-end-position: ** 1480992 *...") |
(Created page with "Category:gene == Gene FSU_RS06080 == * common-name: ** carb * transcription-direction: ** negative * centisome-position: ** 38.537354 * left-end-position: ** 1480992 *...") |
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(2 intermediate revisions by 2 users not shown) | |||
Line 12: | Line 12: | ||
** 1484210 | ** 1484210 | ||
== Organism(s) associated with this gene == | == Organism(s) associated with this gene == | ||
− | * [[ | + | * [[fsucgem]] |
== Reaction(s) associated == | == Reaction(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
* [[CARBPSYN-RXN]] | * [[CARBPSYN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** source: [[ | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
** Category: [[orthology]] | ** Category: [[orthology]] | ||
− | *** source: [[ | + | *** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a |
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | *** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a | ||
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | *** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a | ||
− | |||
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | *** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a | ||
+ | *** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a | ||
* [[GLUTAMIN-RXN]] | * [[GLUTAMIN-RXN]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** source: [[ | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
* [[RXN-13202]] | * [[RXN-13202]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** source: [[ | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
* [[RXN-14196]] | * [[RXN-14196]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** source: [[ | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
* [[RXN-16909]] | * [[RXN-16909]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** source: [[ | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
* [[RXN-16910]] | * [[RXN-16910]] | ||
** Category: [[annotation]] | ** Category: [[annotation]] | ||
− | *** source: [[ | + | *** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a |
</div> | </div> | ||
== Pathway(s) associated == | == Pathway(s) associated == | ||
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | <div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;"> | ||
− | |||
− | |||
* [[PWY-5686]] | * [[PWY-5686]] | ||
** '''6''' reactions found over '''6''' reactions in the full pathway | ** '''6''' reactions found over '''6''' reactions in the full pathway | ||
Line 54: | Line 52: | ||
* [[PWY-7400]] | * [[PWY-7400]] | ||
** '''7''' reactions found over '''9''' reactions in the full pathway | ** '''7''' reactions found over '''9''' reactions in the full pathway | ||
+ | * [[PWY-7791]] | ||
+ | ** '''5''' reactions found over '''6''' reactions in the full pathway | ||
* [[ARGSYNBSUB-PWY]] | * [[ARGSYNBSUB-PWY]] | ||
** '''9''' reactions found over '''9''' reactions in the full pathway | ** '''9''' reactions found over '''9''' reactions in the full pathway | ||
Line 78: | Line 78: | ||
{{#set: left-end-position=1480992}} | {{#set: left-end-position=1480992}} | ||
{{#set: right-end-position=1484210}} | {{#set: right-end-position=1484210}} | ||
− | {{#set: organism associated= | + | {{#set: organism associated=fsucgem}} |
{{#set: nb reaction associated=6}} | {{#set: nb reaction associated=6}} | ||
{{#set: nb pathway associated=15}} | {{#set: nb pathway associated=15}} |
Latest revision as of 11:21, 17 October 2022
Contents
Gene FSU_RS06080
- common-name:
- carb
- transcription-direction:
- negative
- centisome-position:
- 38.537354
- left-end-position:
- 1480992
- right-end-position:
- 1484210
Organism(s) associated with this gene
Reaction(s) associated
- CARBPSYN-RXN
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: orthology
- source: ecoli; tool: orthofinder; comment: n.a
- source: bifidobacterium; tool: orthofinder; comment: n.a
- source: faecalibacterium; tool: orthofinder; comment: n.a
- source: plantarum; tool: orthofinder; comment: n.a
- source: bthetaiotaomicron; tool: orthofinder; comment: n.a
- Category: annotation
- GLUTAMIN-RXN
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-13202
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-14196
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16909
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
- RXN-16910
- Category: annotation
- source: fibrobacter_succinogenes1; tool: pathwaytools; comment: n.a
- Category: annotation
Pathway(s) associated
- PWY-5686
- 6 reactions found over 6 reactions in the full pathway
- PWY-7790
- 6 reactions found over 6 reactions in the full pathway
- PWY-5154
- 7 reactions found over 9 reactions in the full pathway
- ARGSYN-PWY
- 5 reactions found over 4 reactions in the full pathway
- PWY-7400
- 7 reactions found over 9 reactions in the full pathway
- PWY-7791
- 5 reactions found over 6 reactions in the full pathway
- ARGSYNBSUB-PWY
- 9 reactions found over 9 reactions in the full pathway
- PWY490-4
- 3 reactions found over 4 reactions in the full pathway
- PWY-5921
- 4 reactions found over 4 reactions in the full pathway
- CITRULBIO-PWY
- 8 reactions found over 8 reactions in the full pathway
- GLUTAMINDEG-PWY
- 1 reactions found over 1 reactions in the full pathway
- PWY-4984
- 5 reactions found over 5 reactions in the full pathway
- PWY-7693
- 3 reactions found over 13 reactions in the full pathway
- PWY0-41
- 2 reactions found over 5 reactions in the full pathway
- CITRULLINE-DEG-PWY
- 3 reactions found over 3 reactions in the full pathway