Difference between revisions of "FSU RS06080"

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(Created page with "Category:gene == Gene FSU_RS01605 == * common-name: ** fabf * transcription-direction: ** negative * centisome-position: ** 9.920547 * left-end-position: ** 381247 * r...")
(Created page with "Category:gene == Gene FSU_RS06080 == * common-name: ** carb * transcription-direction: ** negative * centisome-position: ** 38.537354 * left-end-position: ** 1480992 *...")
 
(One intermediate revision by one other user not shown)
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[[Category:gene]]
 
[[Category:gene]]
−
== Gene FSU_RS01605 ==
+
== Gene FSU_RS06080 ==
 
* common-name:
 
* common-name:
−
** fabf
+
** carb
 
* transcription-direction:
 
* transcription-direction:
 
** negative
 
** negative
 
* centisome-position:
 
* centisome-position:
−
** 9.920547    
+
** 38.537354    
 
* left-end-position:
 
* left-end-position:
−
** 381247
+
** 1480992
 
* right-end-position:
 
* right-end-position:
−
** 382491
+
** 1484210
 
== Organism(s) associated with this gene  ==
 
== Organism(s) associated with this gene  ==
 
* [[fsucgem]]
 
* [[fsucgem]]
 
== Reaction(s) associated ==
 
== Reaction(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[2.3.1.179-RXN]]
+
* [[CARBPSYN-RXN]]
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[2.3.1.41-RXN]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
* [[3-OXOACYL-ACP-SYNTH-RXN]]
+
*** source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
−
** Category: [[annotation]]
+
*** source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
+
*** source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
−
* [[RXN-10059]]
+
*** source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
−
** Category: [[manual]]
+
* [[GLUTAMIN-RXN]]
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN-10654]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-10658]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11474]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-11479]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16615]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16621]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16625]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-16629]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-8391]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9516]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9523]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9527]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9531]]
 
−
** Category: [[annotation]]
 
−
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
−
* [[RXN-9535]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9539]]
+
* [[RXN-13202]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN-9632]]
+
* [[RXN-14196]]
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN-9648]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN-9650]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN-9651]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN-9652]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN-9653]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN-9654]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN0-2141]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN1G-368]]
+
* [[RXN-16909]]
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN1G-445]]
 
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN1G-460]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* [[RXN1G-499]]
+
* [[RXN-16910]]
−
** Category: [[manual]]
 
−
*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
 
−
* [[RXN3O-1803]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
Line 119: Line 42:
 
== Pathway(s) associated ==
 
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
−
* [[PWY-5973]]
+
* [[PWY-5686]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[FASYN-INITIAL-PWY]]
+
* [[PWY-7790]]
−
** '''5''' reactions found over '''2''' reactions in the full pathway
+
** '''6''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-7388]]
+
* [[PWY-5154]]
−
** '''6''' reactions found over '''9''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[PWY-5966]]
+
* [[ARGSYN-PWY]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''5''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5965]]
+
* [[PWY-7400]]
−
** '''2''' reactions found over '''2''' reactions in the full pathway
+
** '''7''' reactions found over '''9''' reactions in the full pathway
−
* [[FASYN-ELONG-PWY]]
+
* [[PWY-7791]]
−
** '''3''' reactions found over '''5''' reactions in the full pathway
+
** '''5''' reactions found over '''6''' reactions in the full pathway
−
* [[PWY-6113]]
+
* [[ARGSYNBSUB-PWY]]
−
** '''7''' reactions found over '''4''' reactions in the full pathway
+
** '''9''' reactions found over '''9''' reactions in the full pathway
−
* [[PWYG-321]]
+
* [[PWY490-4]]
−
** '''12''' reactions found over '''182''' reactions in the full pathway
 
−
* [[PWY-6282]]
 
−
** '''6''' reactions found over '''9''' reactions in the full pathway
 
−
* [[PWY-6519]]
 
−
** '''11''' reactions found over '''11''' reactions in the full pathway
 
−
* [[PWY-7664]]
 
−
** '''10''' reactions found over '''14''' reactions in the full pathway
 
−
* [[PWY-7663]]
 
 
** '''3''' reactions found over '''4''' reactions in the full pathway
 
** '''3''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5367]]
+
* [[PWY-5921]]
−
** '''2''' reactions found over '''6''' reactions in the full pathway
+
** '''4''' reactions found over '''4''' reactions in the full pathway
−
* [[PWY-5971]]
+
* [[CITRULBIO-PWY]]
−
** '''22''' reactions found over '''31''' reactions in the full pathway
+
** '''8''' reactions found over '''8''' reactions in the full pathway
−
* [[PWY-5989]]
+
* [[GLUTAMINDEG-PWY]]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''1''' reactions found over '''1''' reactions in the full pathway
−
* [[PWY-5994]]
+
* [[PWY-4984]]
−
** '''20''' reactions found over '''31''' reactions in the full pathway
+
** '''5''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY-7858]]
+
* [[PWY-7693]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''13''' reactions in the full pathway
−
* [[PWY0-862]]
+
* [[PWY0-41]]
−
** '''4''' reactions found over '''6''' reactions in the full pathway
+
** '''2''' reactions found over '''5''' reactions in the full pathway
−
* [[PWY3O-355]]
+
* [[CITRULLINE-DEG-PWY]]
−
** '''3''' reactions found over '''6''' reactions in the full pathway
+
** '''3''' reactions found over '''3''' reactions in the full pathway
 
</div>
 
</div>
−
{{#set: common-name=fabf}}
+
{{#set: common-name=carb}}
 
{{#set: transcription-direction=negative}}
 
{{#set: transcription-direction=negative}}
−
{{#set: centisome-position=9.920547   }}
+
{{#set: centisome-position=38.537354   }}
−
{{#set: left-end-position=381247}}
+
{{#set: left-end-position=1480992}}
−
{{#set: right-end-position=382491}}
+
{{#set: right-end-position=1484210}}
 
{{#set: organism associated=fsucgem}}
 
{{#set: organism associated=fsucgem}}
−
{{#set: nb reaction associated=33}}
+
{{#set: nb reaction associated=6}}
−
{{#set: nb pathway associated=19}}
+
{{#set: nb pathway associated=15}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS06080

  • common-name:
    • carb
  • transcription-direction:
    • negative
  • centisome-position:
    • 38.537354
  • left-end-position:
    • 1480992
  • right-end-position:
    • 1484210

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5686
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-7790
    • 6 reactions found over 6 reactions in the full pathway
  • PWY-5154
    • 7 reactions found over 9 reactions in the full pathway
  • ARGSYN-PWY
    • 5 reactions found over 4 reactions in the full pathway
  • PWY-7400
    • 7 reactions found over 9 reactions in the full pathway
  • PWY-7791
    • 5 reactions found over 6 reactions in the full pathway
  • ARGSYNBSUB-PWY
    • 9 reactions found over 9 reactions in the full pathway
  • PWY490-4
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5921
    • 4 reactions found over 4 reactions in the full pathway
  • CITRULBIO-PWY
    • 8 reactions found over 8 reactions in the full pathway
  • GLUTAMINDEG-PWY
    • 1 reactions found over 1 reactions in the full pathway
  • PWY-4984
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-7693
    • 3 reactions found over 13 reactions in the full pathway
  • PWY0-41
    • 2 reactions found over 5 reactions in the full pathway
  • CITRULLINE-DEG-PWY
    • 3 reactions found over 3 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS06080&oldid=94729"