Difference between revisions of "FISUC RS00790"

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(Created page with "Category:reaction == Reaction RXN-16380 == * ec-number: ** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3] * direction: ** left-to-right * common-name: ** long-chain fatt...")
(Created page with "Category:gene == Gene FISUC_RS00790 == * transcription-direction: ** positive * centisome-position: ** 4.7005243 * left-end-position: ** 180624 * right-end-position: *...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction RXN-16380 ==
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== Gene FISUC_RS00790 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/6.2.1.3 ec-6.2.1.3]
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** positive
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* direction:
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* centisome-position:
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** left-to-right
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** 4.7005243   
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* common-name:
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* left-end-position:
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** long-chain fatty acid--coa ligase
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** 180624
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== Reaction formula ==
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* right-end-position:
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* 1 [[ATP]][c] '''+''' 1 [[CO-A]][c] '''+''' 1 [[STEARIC_ACID]][c] '''=>''' 1 [[AMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[STEAROYL-COA]][c]
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** 181979
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FSU_RS14015]]
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* [[fsucgem]]
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== Reaction(s) associated ==
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* [[ACETYLHOMOSER-CYS-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[orthology]]
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* [[ACSERLY-RXN]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FISUC_RS12045]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s)  ==
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* [[O-ACETYLHOMOSERINE-THIOL-LYASE-RXN]]
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* [[PWY-5989]], stearate biosynthesis II (bacteria and plants):
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** Category: [[annotation]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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== Reconstruction information  ==
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* [[RXN-12726]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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** Category: [[annotation]]
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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== Pathway(s) associated ==
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== External links  ==
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* [[PWY-5344]]
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{{#set: ec-number=ec-6.2.1.3}}
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** '''2''' reactions found over '''2''' reactions in the full pathway
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{{#set: direction=left-to-right}}
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* [[CYSTSYN-PWY]]
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{{#set: common-name=long-chain fatty acid--coa ligase}}
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** '''2''' reactions found over '''2''' reactions in the full pathway
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{{#set: nb gene associated=2}}
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* [[PWY-7174]]
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{{#set: nb pathway associated=1}}
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** '''1''' reactions found over '''4''' reactions in the full pathway
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{{#set: reconstruction category=orthology|annotation}}
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* [[PWY-6936]]
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
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** '''3''' reactions found over '''5''' reactions in the full pathway
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{{#set: reconstruction comment=n.a}}
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{{#set: transcription-direction=positive}}
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{{#set: reconstruction source=genome|faecalibacterium|bthetaiotaomicron}}
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{{#set: centisome-position=4.7005243    }}
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{{#set: left-end-position=180624}}
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{{#set: right-end-position=181979}}
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{{#set: organism associated=fsucgem}}
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{{#set: nb reaction associated=4}}
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{{#set: nb pathway associated=4}}

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS00790

  • transcription-direction:
    • positive
  • centisome-position:
    • 4.7005243
  • left-end-position:
    • 180624
  • right-end-position:
    • 181979

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5344
    • 2 reactions found over 2 reactions in the full pathway
  • CYSTSYN-PWY
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-7174
    • 1 reactions found over 4 reactions in the full pathway
  • PWY-6936
    • 3 reactions found over 5 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS00790&oldid=94733"