Difference between revisions of "FSU RS01605"

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(Created page with "Category:reaction == Reaction GLUTAMATE-DEHYDROGENASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2] * direction: ** left-to-right == Reaction for...")
(Created page with "Category:gene == Gene FSU_RS01605 == * common-name: ** fabf * transcription-direction: ** negative * centisome-position: ** 9.920547 * left-end-position: ** 381247 * r...")
 
(8 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction GLUTAMATE-DEHYDROGENASE-RXN ==
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== Gene FSU_RS01605 ==
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* ec-number:
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* common-name:
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** [http://enzyme.expasy.org/EC/1.4.1.2 ec-1.4.1.2]
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** fabf
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* direction:
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* transcription-direction:
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** left-to-right
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** negative
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== Reaction formula ==
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* centisome-position:
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* 1 [[GLT]][c] '''+''' 1 [[NAD]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[AMMONIUM]][c] '''+''' 1 [[NADH]][c] '''+''' 1 [[PROTON]][c]
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** 9.920547   
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== Gene(s) associated with this reaction  ==
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* left-end-position:
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* Gene: [[FSU_RS00325]]
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** 381247
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* right-end-position:
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** 382491
 +
== Organism(s) associated with this gene  ==
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* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[2.3.1.179-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[2.3.1.41-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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== Pathway(s)  ==
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* [[3-OXOACYL-ACP-SYNTH-RXN]]
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* [[PWY-5022]], 4-aminobutanoate degradation V:
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** Category: [[annotation]]
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** '''1''' reactions found over '''7''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-7126]], ethylene biosynthesis IV (engineered):
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* [[RXN-10059]]
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** '''1''' reactions found over '''3''' reactions in the full pathway
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** Category: [[manual]]
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* [[P162-PWY]], L-glutamate degradation V (via hydroxyglutarate):
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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** '''1''' reactions found over '''11''' reactions in the full pathway
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* [[RXN-10654]]
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* [[GLUTAMATE-DEG1-PWY]], L-glutamate degradation I:
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** Category: [[annotation]]
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** '''1''' reactions found over '''1''' reactions in the full pathway
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[PWY-6728]], methylaspartate cycle:
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* [[RXN-10658]]
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** '''9''' reactions found over '''19''' reactions in the full pathway
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** Category: [[annotation]]
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* [[ALACAT2-PWY]], L-alanine degradation II (to D-lactate):
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** '''3''' reactions found over '''3''' reactions in the full pathway
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* [[RXN-11474]]
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== Reconstruction information  ==
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** Category: [[annotation]]
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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== External links  ==
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* [[RXN-11479]]
 +
** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-16615]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-16621]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16625]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-16629]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-8391]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[RXN-9516]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9523]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9527]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9531]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9535]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9539]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9632]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9648]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9650]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9651]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9652]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9653]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9654]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN0-2141]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-368]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN1G-445]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN1G-460]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-499]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN3O-1803]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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</div>
 +
== Pathway(s) associated ==
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* RHEA:
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* [[PWY-5973]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=15136 15136]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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* LIGAND-RXN:
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* [[FASYN-INITIAL-PWY]]
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** [http://www.genome.jp/dbget-bin/www_bget?R00243 R00243]
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** '''5''' reactions found over '''2''' reactions in the full pathway
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* UNIPROT:
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* [[PWY-7388]]
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** [http://www.uniprot.org/uniprot/P20016 P20016]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P28997 P28997]
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* [[PWY-5966]]
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** [http://www.uniprot.org/uniprot/P41755 P41755]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/Q9JTP6 Q9JTP6]
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* [[PWY-5965]]
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** [http://www.uniprot.org/uniprot/P00365 P00365]
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** '''2''' reactions found over '''2''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P93541 P93541]
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* [[FASYN-ELONG-PWY]]
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** [http://www.uniprot.org/uniprot/P80319 P80319]
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** '''3''' reactions found over '''5''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P24295 P24295]
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* [[PWY-6113]]
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** [http://www.uniprot.org/uniprot/P27346 P27346]
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** '''7''' reactions found over '''4''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/P33327 P33327]
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* [[PWYG-321]]
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** [http://www.uniprot.org/uniprot/Q43260 Q43260]
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** '''12''' reactions found over '''182''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/O04937 O04937]
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* [[PWY-6282]]
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** [http://www.uniprot.org/uniprot/Q25415 Q25415]
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** '''6''' reactions found over '''9''' reactions in the full pathway
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** [http://www.uniprot.org/uniprot/O74024 O74024]
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* [[PWY-6519]]
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** [http://www.uniprot.org/uniprot/O59650 O59650]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7664]]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-7663]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5367]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5971]]
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** '''22''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5989]]
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** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5994]]
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** '''20''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7858]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 
</div>
 
</div>
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{{#set: ec-number=ec-1.4.1.2}}
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{{#set: common-name=fabf}}
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{{#set: direction=left-to-right}}
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{{#set: transcription-direction=negative}}
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{{#set: nb gene associated=1}}
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{{#set: centisome-position=9.920547    }}
−
{{#set: nb pathway associated=6}}
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{{#set: left-end-position=381247}}
−
{{#set: reconstruction category=orthology}}
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{{#set: right-end-position=382491}}
−
{{#set: reconstruction tool=orthofinder}}
+
{{#set: organism associated=fsucgem}}
−
{{#set: reconstruction comment=n.a}}
+
{{#set: nb reaction associated=33}}
−
{{#set: reconstruction source=bthetaiotaomicron}}
+
{{#set: nb pathway associated=19}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS01605

  • common-name:
    • fabf
  • transcription-direction:
    • negative
  • centisome-position:
    • 9.920547
  • left-end-position:
    • 381247
  • right-end-position:
    • 382491

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5965
    • 2 reactions found over 2 reactions in the full pathway
  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway





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