Difference between revisions of "FSU RS01605"

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(Created page with "Category:reaction == Reaction UDPNACETYLGLUCOSAMACYLTRANS-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.3.1.129 ec-2.3.1.129] * direction: ** left-to-right * commo...")
(Created page with "Category:gene == Gene FSU_RS01605 == * common-name: ** fabf * transcription-direction: ** negative * centisome-position: ** 9.920547 * left-end-position: ** 381247 * r...")
 
(5 intermediate revisions by 3 users not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction UDPNACETYLGLUCOSAMACYLTRANS-RXN ==
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== Gene FSU_RS01605 ==
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* ec-number:
 
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** [http://enzyme.expasy.org/EC/2.3.1.129 ec-2.3.1.129]
 
−
* direction:
 
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** left-to-right
 
 
* common-name:
 
* common-name:
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** acyl-acp--udp-n-acetylglucosamine o-acyltransferase
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** fabf
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== Reaction formula ==
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* transcription-direction:
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* 1 [[R-3-hydroxymyristoyl-ACPs]][c] '''+''' 1 [[UDP-N-ACETYL-D-GLUCOSAMINE]][c] '''=>''' 1 [[ACP]][c] '''+''' 1 [[UDP-OHMYR-ACETYLGLUCOSAMINE]][c]
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** negative
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== Gene(s) associated with this reaction  ==
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* centisome-position:
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* Gene: [[FISUC_RS07620]]
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** 9.920547   
 +
* left-end-position:
 +
** 381247
 +
* right-end-position:
 +
** 382491
 +
== Organism(s) associated with this gene  ==
 +
* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[2.3.1.179-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS09545]]
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* [[2.3.1.41-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
−
*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
* [[3-OXOACYL-ACP-SYNTH-BASE-RXN]]
 +
** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 
** Category: [[orthology]]
 
** Category: [[orthology]]
−
*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
+
*** source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[3-OXOACYL-ACP-SYNTH-RXN]]
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* Gene: [[FSU_RS12070]]
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** Category: [[annotation]]
−
** Category: [[orthology]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[RXN-10059]]
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== Pathway(s)  ==
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** Category: [[manual]]
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* [[NAGLIPASYN-PWY]], lipid IVA biosynthesis:
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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** '''6''' reactions found over '''6''' reactions in the full pathway
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* [[RXN-10654]]
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== Reconstruction information  ==
+
** Category: [[annotation]]
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
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* [[RXN-10658]]
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
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** Category: [[annotation]]
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== External links  ==
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* RHEA:
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* [[RXN-11474]]
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=13926 13926]
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** Category: [[annotation]]
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* LIGAND-RXN:
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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** [http://www.genome.jp/dbget-bin/www_bget?R04567 R04567]
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* [[RXN-11479]]
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* UNIPROT:
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** Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/Q9PIM1 Q9PIM1]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
** [http://www.uniprot.org/uniprot/Q9JX26 Q9JX26]
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* [[RXN-16615]]
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** [http://www.uniprot.org/uniprot/P43887 P43887]
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** Category: [[annotation]]
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** [http://www.uniprot.org/uniprot/P32200 P32200]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
** [http://www.uniprot.org/uniprot/P32201 P32201]
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* [[RXN-16621]]
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** [http://www.uniprot.org/uniprot/P0A722 P0A722]
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** Category: [[annotation]]
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{{#set: ec-number=ec-2.3.1.129}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
−
{{#set: direction=left-to-right}}
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* [[RXN-16625]]
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{{#set: common-name=acyl-acp--udp-n-acetylglucosamine o-acyltransferase}}
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** Category: [[annotation]]
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{{#set: nb gene associated=3}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: nb pathway associated=1}}
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* [[RXN-16629]]
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{{#set: reconstruction category=annotation|orthology}}
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** Category: [[annotation]]
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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{{#set: reconstruction comment=n.a}}
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* [[RXN-8391]]
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{{#set: reconstruction source=genome|bthetaiotaomicron|ecoli}}
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9516]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9523]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9527]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9531]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9535]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9539]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN-9632]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9648]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9650]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9651]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9652]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9653]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN-9654]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN0-2141]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-368]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN1G-445]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN1G-460]]
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** Category: [[annotation]]
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* [[RXN1G-499]]
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** Category: [[manual]]
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*** source: [[add_expert_reactions]]; tool: [[unknown-tool]]; comment: added to improve flux in sugars
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* [[RXN3O-1803]]
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** Category: [[annotation]]
 +
*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
 +
</div>
 +
== Pathway(s) associated ==
 +
<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[PWY-5973]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[FASYN-INITIAL-PWY]]
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** '''5''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-7388]]
 +
** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-5966]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[PWY-5965]]
 +
** '''2''' reactions found over '''2''' reactions in the full pathway
 +
* [[FASYN-ELONG-PWY]]
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** '''3''' reactions found over '''5''' reactions in the full pathway
 +
* [[PWY-6113]]
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** '''7''' reactions found over '''4''' reactions in the full pathway
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* [[PWYG-321]]
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** '''12''' reactions found over '''182''' reactions in the full pathway
 +
* [[PWY-6282]]
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** '''6''' reactions found over '''9''' reactions in the full pathway
 +
* [[PWY-6519]]
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** '''11''' reactions found over '''11''' reactions in the full pathway
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* [[PWY-7664]]
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** '''10''' reactions found over '''14''' reactions in the full pathway
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* [[PWY-7663]]
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** '''3''' reactions found over '''4''' reactions in the full pathway
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* [[PWY-5367]]
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** '''2''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5971]]
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** '''22''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-5989]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY-5994]]
 +
** '''20''' reactions found over '''31''' reactions in the full pathway
 +
* [[PWY-7858]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY0-862]]
 +
** '''4''' reactions found over '''6''' reactions in the full pathway
 +
* [[PWY3O-355]]
 +
** '''3''' reactions found over '''6''' reactions in the full pathway
 +
</div>
 +
{{#set: common-name=fabf}}
 +
{{#set: transcription-direction=negative}}
 +
{{#set: centisome-position=9.920547    }}
 +
{{#set: left-end-position=381247}}
 +
{{#set: right-end-position=382491}}
 +
{{#set: organism associated=fsucgem}}
 +
{{#set: nb reaction associated=33}}
 +
{{#set: nb pathway associated=19}}

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS01605

  • common-name:
    • fabf
  • transcription-direction:
    • negative
  • centisome-position:
    • 9.920547
  • left-end-position:
    • 381247
  • right-end-position:
    • 382491

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-5973
    • 3 reactions found over 5 reactions in the full pathway
  • FASYN-INITIAL-PWY
    • 5 reactions found over 2 reactions in the full pathway
  • PWY-7388
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-5966
    • 2 reactions found over 2 reactions in the full pathway
  • PWY-5965
    • 2 reactions found over 2 reactions in the full pathway
  • FASYN-ELONG-PWY
    • 3 reactions found over 5 reactions in the full pathway
  • PWY-6113
    • 7 reactions found over 4 reactions in the full pathway
  • PWYG-321
    • 12 reactions found over 182 reactions in the full pathway
  • PWY-6282
    • 6 reactions found over 9 reactions in the full pathway
  • PWY-6519
    • 11 reactions found over 11 reactions in the full pathway
  • PWY-7664
    • 10 reactions found over 14 reactions in the full pathway
  • PWY-7663
    • 3 reactions found over 4 reactions in the full pathway
  • PWY-5367
    • 2 reactions found over 6 reactions in the full pathway
  • PWY-5971
    • 22 reactions found over 31 reactions in the full pathway
  • PWY-5989
    • 4 reactions found over 6 reactions in the full pathway
  • PWY-5994
    • 20 reactions found over 31 reactions in the full pathway
  • PWY-7858
    • 3 reactions found over 6 reactions in the full pathway
  • PWY0-862
    • 4 reactions found over 6 reactions in the full pathway
  • PWY3O-355
    • 3 reactions found over 6 reactions in the full pathway





Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS01605&oldid=94735"