Difference between revisions of "FSU RS06720"

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(Created page with "Category:reaction == Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.6 ec-2.6.1.6] ** [http://enzyme.expasy.org/EC/2.6.1....")
(Created page with "Category:gene == Gene FSU_RS06720 == * transcription-direction: ** negative * centisome-position: ** 42.69829 * left-end-position: ** 1640897 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction BRANCHED-CHAINAMINOTRANSFERLEU-RXN ==
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== Gene FSU_RS06720 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.6.1.6 ec-2.6.1.6]
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** negative
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** [http://enzyme.expasy.org/EC/2.6.1.42 ec-2.6.1.42]
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* centisome-position:
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* direction:
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** 42.69829   
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** reversible
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* left-end-position:
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* common-name:
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** 1640897
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** branched-chain amino acid aminotransferase
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* right-end-position:
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== Reaction formula ==
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** 1642078
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[LEU]][c] '''<=>''' 1 [[2K-4CH3-PENTANOATE]][c] '''+''' 1 [[GLT]][c]
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== Organism(s) associated with this gene  ==
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== Gene(s) associated with this reaction  ==
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* [[fsucgem]]
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* Gene: [[FISUC_RS03245]]
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== Reaction(s) associated ==
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* [[TEICHOICSYN3-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS05135]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
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* [[PWY-7815]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** '''4''' reactions found over '''15''' reactions in the full pathway
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** Category: [[orthology]]
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* [[TEICHOICACID-PWY]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''4''' reactions found over '''12''' reactions in the full pathway
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7816]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''4''' reactions found over '''17''' reactions in the full pathway
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-7819]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''4''' reactions found over '''11''' reactions in the full pathway
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== Pathway(s) ==
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{{#set: transcription-direction=negative}}
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* [[LEU-DEG2-PWY]], L-leucine degradation I:
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{{#set: centisome-position=42.69829    }}
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** '''1''' reactions found over '''6''' reactions in the full pathway
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{{#set: left-end-position=1640897}}
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* [[PWY-5076]], L-leucine degradation III:
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{{#set: right-end-position=1642078}}
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** '''2''' reactions found over '''3''' reactions in the full pathway
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{{#set: organism associated=fsucgem}}
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* [[PWY-7767]], L-leucine degradation IV (Stickland reaction):
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{{#set: nb reaction associated=1}}
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** '''1''' reactions found over '''5''' reactions in the full pathway
 
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* [[LEUSYN-PWY]], L-leucine biosynthesis:
 
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** '''6''' reactions found over '''6''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18324 18324]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01090 R01090]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q9PIM6 Q9PIM6]
 
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** [http://www.uniprot.org/uniprot/P38891 P38891]
 
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** [http://www.uniprot.org/uniprot/P47176 P47176]
 
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** [http://www.uniprot.org/uniprot/O86505 O86505]
 
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** [http://www.uniprot.org/uniprot/O14370 O14370]
 
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** [http://www.uniprot.org/uniprot/O32954 O32954]
 
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** [http://www.uniprot.org/uniprot/P0AB80 P0AB80]
 
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{{#set: ec-number=ec-2.6.1.42|ec-2.6.1.6}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=branched-chain amino acid aminotransferase}}
 
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{{#set: nb gene associated=2}}
 
 
{{#set: nb pathway associated=4}}
 
{{#set: nb pathway associated=4}}
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bifidobacterium|ecoli|faecalibacterium|genome|bthetaiotaomicron|plantarum}}
 

Latest revision as of 11:21, 17 October 2022

Gene FSU_RS06720

  • transcription-direction:
    • negative
  • centisome-position:
    • 42.69829
  • left-end-position:
    • 1640897
  • right-end-position:
    • 1642078

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-7815
    • 4 reactions found over 15 reactions in the full pathway
  • TEICHOICACID-PWY
    • 4 reactions found over 12 reactions in the full pathway
  • PWY-7816
    • 4 reactions found over 17 reactions in the full pathway
  • PWY-7819
    • 4 reactions found over 11 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS06720&oldid=94750"