Difference between revisions of "FISUC RS07880"

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(Created page with "Category:reaction == Reaction TRIOSEPISOMERIZATION-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/5.3.1.1 ec-5.3.1.1] * direction: ** reversible * common-name: ** tri...")
(Created page with "Category:gene == Gene FISUC_RS07880 == * transcription-direction: ** negative * centisome-position: ** 50.188087 * left-end-position: ** 1928545 * right-end-position:...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction TRIOSEPISOMERIZATION-RXN ==
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== Gene FISUC_RS07880 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/5.3.1.1 ec-5.3.1.1]
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** negative
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* direction:
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* centisome-position:
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** reversible
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** 50.188087   
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* common-name:
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* left-end-position:
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** triose-phosphate isomerase
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** 1928545
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== Reaction formula ==
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* right-end-position:
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* 1 [[GAP]][c] '''<=>''' 1 [[DIHYDROXY-ACETONE-PHOSPHATE]][c]
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** 1929306
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== Gene(s) associated with this reaction  ==
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== Organism(s) associated with this gene  ==
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* Gene: [[FISUC_RS11910]]
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* [[fsucgem]]
 +
== Reaction(s) associated ==
 +
* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FSU_RS13880]]
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== Pathway(s) associated ==
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** Category: [[annotation]]
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* [[PWY-6163]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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** '''5''' reactions found over '''5''' reactions in the full pathway
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** Category: [[orthology]]
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* [[PWY-6416]]
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''2''' reactions found over '''3''' reactions in the full pathway
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[QUINATEDEG-PWY]]
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''3''' reactions in the full pathway
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[PWY-6707]]
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Pathway(s) ==
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{{#set: transcription-direction=negative}}
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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{{#set: centisome-position=50.188087    }}
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* [[PWY-5484]], glycolysis II (from fructose 6-phosphate):
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{{#set: left-end-position=1928545}}
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** '''11''' reactions found over '''11''' reactions in the full pathway
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{{#set: right-end-position=1929306}}
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* [[PWY-7003]], glycerol degradation to butanol:
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{{#set: organism associated=fsucgem}}
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** '''7''' reactions found over '''6''' reactions in the full pathway
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{{#set: nb reaction associated=1}}
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* [[PWY-1042]], glycolysis IV (plant cytosol):
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{{#set: nb pathway associated=4}}
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** '''9''' reactions found over '''10''' reactions in the full pathway
 
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* [[CALVIN-PWY]], Calvin-Benson-Bassham cycle:
 
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** '''13''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY66-373]], sucrose degradation V (sucrose &alpha;-glucosidase):
 
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** '''2''' reactions found over '''5''' reactions in the full pathway
 
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* [[P185-PWY]], formaldehyde assimilation III (dihydroxyacetone cycle):
 
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** '''10''' reactions found over '''12''' reactions in the full pathway
 
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* [[ANAGLYCOLYSIS-PWY]], glycolysis III (from glucose):
 
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** '''11''' reactions found over '''11''' reactions in the full pathway
 
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* [[GLYCOLYSIS]], glycolysis I (from glucose 6-phosphate):
 
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** '''12''' reactions found over '''12''' reactions in the full pathway
 
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* [[PWY66-399]], gluconeogenesis III:
 
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** '''11''' reactions found over '''12''' reactions in the full pathway
 
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* [[P341-PWY]], glycolysis V (Pyrococcus):
 
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** '''7''' reactions found over '''10''' reactions in the full pathway
 
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* [[GLUCONEO-PWY]], gluconeogenesis I:
 
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** '''12''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-6142]], gluconeogenesis II (Methanobacterium thermoautotrophicum):
 
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** '''10''' reactions found over '''13''' reactions in the full pathway
 
−
</div>
 
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== Reconstruction information  ==
 
−
* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
−
* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=18588 18588]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R01015 R01015]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/P19118 P19118]
 
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** [http://www.uniprot.org/uniprot/P21820 P21820]
 
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** [http://www.uniprot.org/uniprot/P48501 P48501]
 
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** [http://www.uniprot.org/uniprot/P62002 P62002]
 
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** [http://www.uniprot.org/uniprot/O27120 O27120]
 
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** [http://www.uniprot.org/uniprot/P27876 P27876]
 
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** [http://www.uniprot.org/uniprot/Q9PMQ6 Q9PMQ6]
 
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** [http://www.uniprot.org/uniprot/P19583 P19583]
 
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** [http://www.uniprot.org/uniprot/Q9UXX2 Q9UXX2]
 
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** [http://www.uniprot.org/uniprot/P47721 P47721]
 
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** [http://www.uniprot.org/uniprot/P47670 P47670]
 
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** [http://www.uniprot.org/uniprot/P50918 P50918]
 
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** [http://www.uniprot.org/uniprot/P43727 P43727]
 
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** [http://www.uniprot.org/uniprot/Q58923 Q58923]
 
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** [http://www.uniprot.org/uniprot/O28965 O28965]
 
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** [http://www.uniprot.org/uniprot/Q59182 Q59182]
 
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** [http://www.uniprot.org/uniprot/O59536 O59536]
 
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** [http://www.uniprot.org/uniprot/P36204 P36204]
 
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** [http://www.uniprot.org/uniprot/Q9JW31 Q9JW31]
 
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** [http://www.uniprot.org/uniprot/P04828 P04828]
 
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** [http://www.uniprot.org/uniprot/P00943 P00943]
 
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** [http://www.uniprot.org/uniprot/P00942 P00942]
 
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** [http://www.uniprot.org/uniprot/P00940 P00940]
 
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** [http://www.uniprot.org/uniprot/P60175 P60175]
 
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** [http://www.uniprot.org/uniprot/P0A858 P0A858]
 
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** [http://www.uniprot.org/uniprot/P60174 P60174]
 
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** [http://www.uniprot.org/uniprot/P00941 P00941]
 
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** [http://www.uniprot.org/uniprot/P15426 P15426]
 
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** [http://www.uniprot.org/uniprot/P17751 P17751]
 
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** [http://www.uniprot.org/uniprot/P00939 P00939]
 
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** [http://www.uniprot.org/uniprot/P12863 P12863]
 
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** [http://www.uniprot.org/uniprot/P07669 P07669]
 
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** [http://www.uniprot.org/uniprot/P35144 P35144]
 
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** [http://www.uniprot.org/uniprot/P48494 P48494]
 
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** [http://www.uniprot.org/uniprot/Q7M4X7 Q7M4X7]
 
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** [http://www.uniprot.org/uniprot/P29613 P29613]
 
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** [http://www.uniprot.org/uniprot/P30741 P30741]
 
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** [http://www.uniprot.org/uniprot/Q01893 Q01893]
 
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** [http://www.uniprot.org/uniprot/P48499 P48499]
 
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** [http://www.uniprot.org/uniprot/P48496 P48496]
 
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** [http://www.uniprot.org/uniprot/P46226 P46226]
 
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** [http://www.uniprot.org/uniprot/P46225 P46225]
 
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** [http://www.uniprot.org/uniprot/P48492 P48492]
 
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** [http://www.uniprot.org/uniprot/Q56738 Q56738]
 
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** [http://www.uniprot.org/uniprot/Q7LZE5 Q7LZE5]
 
−
** [http://www.uniprot.org/uniprot/P46711 P46711]
 
−
** [http://www.uniprot.org/uniprot/O32757 O32757]
 
−
** [http://www.uniprot.org/uniprot/O74067 O74067]
 
−
** [http://www.uniprot.org/uniprot/P48491 P48491]
 
−
</div>
 
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{{#set: ec-number=ec-5.3.1.1}}
 
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{{#set: direction=reversible}}
 
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{{#set: common-name=triose-phosphate isomerase}}
 
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{{#set: nb gene associated=2}}
 
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{{#set: nb pathway associated=12}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
−
{{#set: reconstruction tool=orthofinder|pathwaytools}}
 
−
{{#set: reconstruction comment=n.a}}
 
−
{{#set: reconstruction source=plantarum|ecoli|faecalibacterium|bthetaiotaomicron|genome|bifidobacterium}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS07880

  • transcription-direction:
    • negative
  • centisome-position:
    • 50.188087
  • left-end-position:
    • 1928545
  • right-end-position:
    • 1929306

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6163
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6416
    • 2 reactions found over 3 reactions in the full pathway
  • QUINATEDEG-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6707
    • 1 reactions found over 3 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS07880&oldid=94754"