Difference between revisions of "FISUC RS07880"

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(Created page with "Category:reaction == Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/2.6.1.27 ec-2.6.1.27] * direction: ** reversible == Reaction...")
(Created page with "Category:gene == Gene FISUC_RS07880 == * transcription-direction: ** negative * centisome-position: ** 50.188087 * left-end-position: ** 1928545 * right-end-position:...")
 
(3 intermediate revisions by the same user not shown)
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction TRYPTOPHAN-AMINOTRANSFERASE-RXN ==
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== Gene FISUC_RS07880 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/2.6.1.27 ec-2.6.1.27]
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** negative
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* direction:
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* centisome-position:
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** reversible
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** 50.188087   
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== Reaction formula ==
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* left-end-position:
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* 1 [[2-KETOGLUTARATE]][c] '''+''' 1 [[TRP]][c] '''<=>''' 1 [[GLT]][c] '''+''' 1 [[INDOLE_PYRUVATE]][c]
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** 1928545
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== Gene(s) associated with this reaction  ==
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* right-end-position:
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* Gene: [[FSU_RS14145]]
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** 1929306
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** Category: [[orthology]]
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== Organism(s) associated with this gene  ==
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
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* [[fsucgem]]
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== Pathway(s) ==
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== Reaction(s) associated ==
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* [[PWY-8017]], L-tryptophan degradation XIII (Stickland reaction):
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* [[3-DEHYDROQUINATE-DEHYDRATASE-RXN]]
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** '''2''' reactions found over '''5''' reactions in the full pathway
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** Category: [[annotation]]
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* [[PWY-5081]], L-tryptophan degradation VIII (to tryptophol):
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*** source: [[fibrobacter_succinogenes2]]; tool: [[pathwaytools]]; comment: n.a
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** '''2''' reactions found over '''4''' reactions in the full pathway
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== Pathway(s) associated ==
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* [[TRPKYNCAT-PWY]], L-tryptophan degradation IV (via indole-3-lactate):
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* [[PWY-6163]]
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** '''1''' reactions found over '''2''' reactions in the full pathway
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** '''5''' reactions found over '''5''' reactions in the full pathway
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* [[TRPIAACAT-PWY]], indole-3-acetate biosynthesis VI (bacteria):
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* [[PWY-6416]]
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** '''2''' reactions found over '''3''' reactions in the full pathway
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* [[QUINATEDEG-PWY]]
 
** '''1''' reactions found over '''3''' reactions in the full pathway
 
** '''1''' reactions found over '''3''' reactions in the full pathway
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* [[PWY-581]], indole-3-acetate biosynthesis II:
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* [[PWY-6707]]
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** '''2''' reactions found over '''12''' reactions in the full pathway
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** '''1''' reactions found over '''3''' reactions in the full pathway
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== Reconstruction information  ==
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{{#set: transcription-direction=negative}}
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
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{{#set: centisome-position=50.188087    }}
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== External links  ==
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{{#set: left-end-position=1928545}}
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* RHEA:
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{{#set: right-end-position=1929306}}
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=14096 14096]
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{{#set: organism associated=fsucgem}}
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* LIGAND-RXN:
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{{#set: nb reaction associated=1}}
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** [http://www.genome.jp/dbget-bin/www_bget?R00684 R00684]
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{{#set: nb pathway associated=4}}
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{{#set: ec-number=ec-2.6.1.27}}
 
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{{#set: direction=reversible}}
 
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{{#set: nb gene associated=1}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=orthology}}
 
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{{#set: reconstruction tool=orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=plantarum}}
 

Latest revision as of 11:21, 17 October 2022

Gene FISUC_RS07880

  • transcription-direction:
    • negative
  • centisome-position:
    • 50.188087
  • left-end-position:
    • 1928545
  • right-end-position:
    • 1929306

Organism(s) associated with this gene

Reaction(s) associated

Pathway(s) associated

  • PWY-6163
    • 5 reactions found over 5 reactions in the full pathway
  • PWY-6416
    • 2 reactions found over 3 reactions in the full pathway
  • QUINATEDEG-PWY
    • 1 reactions found over 3 reactions in the full pathway
  • PWY-6707
    • 1 reactions found over 3 reactions in the full pathway




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FISUC_RS07880&oldid=94754"