Difference between revisions of "FSU RS06065"

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(Created page with "Category:reaction == Reaction DUTP-PYROP-RXN == * ec-number: ** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23] ** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9] * di...")
(Created page with "Category:gene == Gene FSU_RS06065 == * transcription-direction: ** negative * centisome-position: ** 38.441074 * left-end-position: ** 1477292 * right-end-position: **...")
 
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[[Category:reaction]]
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[[Category:gene]]
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== Reaction DUTP-PYROP-RXN ==
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== Gene FSU_RS06065 ==
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* ec-number:
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* transcription-direction:
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** [http://enzyme.expasy.org/EC/3.6.1.23 ec-3.6.1.23]
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** negative
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** [http://enzyme.expasy.org/EC/3.6.1.9 ec-3.6.1.9]
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* centisome-position:
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* direction:
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** 38.441074   
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** left-to-right
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* left-end-position:
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* common-name:
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** 1477292
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** nucleoside triphosphate pyrophosphohydrolase
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* right-end-position:
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** dutp diphosphatase
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** 1478755
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== Reaction formula ==
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== Organism(s) associated with this gene  ==
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* 1 [[DUTP]][c] '''+''' 1 [[WATER]][c] '''=>''' 1 [[DUMP]][c] '''+''' 1 [[PPI]][c] '''+''' 1 [[PROTON]][c]
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* [[fsucgem]]
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== Gene(s) associated with this reaction  ==
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== Reaction(s) associated ==
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
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* [[3.1.26.3-RXN]]
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* Gene: [[FISUC_RS00035]]
 
 
** Category: [[annotation]]
 
** Category: [[annotation]]
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
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*** source: [[fibrobacter_succinogenes1]]; tool: [[pathwaytools]]; comment: n.a
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* Gene: [[FISUC_RS02370]]
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{{#set: transcription-direction=negative}}
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** Category: [[annotation]]
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{{#set: centisome-position=38.441074    }}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: left-end-position=1477292}}
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* Gene: [[FSU_RS04260]]
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{{#set: right-end-position=1478755}}
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** Category: [[annotation]]
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{{#set: organism associated=fsucgem}}
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: ec-number, Comment: n.a
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{{#set: nb reaction associated=1}}
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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* Gene: [[FSU_RS01905]]
 
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** Category: [[annotation]]
 
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*** Source: [[genome]], Tool: [[pathwaytools]], Assignment: automated-name-match, Comment: n.a
 
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** Category: [[orthology]]
 
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*** Source: [[bthetaiotaomicron]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[bifidobacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[faecalibacterium]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[ecoli]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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*** Source: [[plantarum]], Tool: [[orthofinder]], Assignment: n.a, Comment: n.a
 
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</div>
 
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== Pathway(s)  ==
 
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* [[PWY0-166]], superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli):
 
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** '''11''' reactions found over '''13''' reactions in the full pathway
 
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* [[PWY-7187]], pyrimidine deoxyribonucleotides de novo biosynthesis II:
 
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** '''7''' reactions found over '''7''' reactions in the full pathway
 
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* [[PWY-7206]], pyrimidine deoxyribonucleotides dephosphorylation:
 
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** '''2''' reactions found over '''3''' reactions in the full pathway
 
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* [[PWY-6545]], pyrimidine deoxyribonucleotides de novo biosynthesis III:
 
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** '''6''' reactions found over '''9''' reactions in the full pathway
 
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* [[PWY-7184]], pyrimidine deoxyribonucleotides de novo biosynthesis I:
 
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** '''7''' reactions found over '''9''' reactions in the full pathway
 
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== Reconstruction information  ==
 
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* category: [[orthology]]; source: [[faecalibacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[ecoli]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bthetaiotaomicron]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[bifidobacterium]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[orthology]]; source: [[plantarum]]; tool: [[orthofinder]]; comment: n.a
 
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* category: [[annotation]]; source: [[genome]]; tool: [[pathwaytools]]; comment: n.a
 
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== External links  ==
 
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<div class="toccolours mw-collapsible mw-collapsed" style="width:100%; overflow:auto;">
 
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* RHEA:
 
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** [http://www.ebi.ac.uk/rhea/reaction.xhtml?id=10249 10249]
 
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* LIGAND-RXN:
 
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** [http://www.genome.jp/dbget-bin/www_bget?R02100 R02100]
 
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* UNIPROT:
 
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** [http://www.uniprot.org/uniprot/Q89932 Q89932]
 
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** [http://www.uniprot.org/uniprot/P33316 P33316]
 
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** [http://www.uniprot.org/uniprot/O15923 O15923]
 
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** [http://www.uniprot.org/uniprot/Q9PMK9 Q9PMK9]
 
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** [http://www.uniprot.org/uniprot/Q9Z9C2 Q9Z9C2]
 
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** [http://www.uniprot.org/uniprot/Q9JUW1 Q9JUW1]
 
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** [http://www.uniprot.org/uniprot/P43792 P43792]
 
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** [http://www.uniprot.org/uniprot/P32518 P32518]
 
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** [http://www.uniprot.org/uniprot/P68635 P68635]
 
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** [http://www.uniprot.org/uniprot/P68634 P68634]
 
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** [http://www.uniprot.org/uniprot/Q76RE7 Q76RE7]
 
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** [http://www.uniprot.org/uniprot/P03195 P03195]
 
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** [http://www.uniprot.org/uniprot/Q89662 Q89662]
 
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** [http://www.uniprot.org/uniprot/Q00030 Q00030]
 
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** [http://www.uniprot.org/uniprot/P33317 P33317]
 
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** [http://www.uniprot.org/uniprot/Q45920 Q45920]
 
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** [http://www.uniprot.org/uniprot/P43058 P43058]
 
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** [http://www.uniprot.org/uniprot/O80091 O80091]
 
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** [http://www.uniprot.org/uniprot/O36404 O36404]
 
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** [http://www.uniprot.org/uniprot/O41033 O41033]
 
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** [http://www.uniprot.org/uniprot/Q9YML1 Q9YML1]
 
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** [http://www.uniprot.org/uniprot/O39251 O39251]
 
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** [http://www.uniprot.org/uniprot/O01934 O01934]
 
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** [http://www.uniprot.org/uniprot/P10234 P10234]
 
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** [http://www.uniprot.org/uniprot/P06968 P06968]
 
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** [http://www.uniprot.org/uniprot/P09254 P09254]
 
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** [http://www.uniprot.org/uniprot/P28892 P28892]
 
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** [http://www.uniprot.org/uniprot/P28893 P28893]
 
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</div>
 
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{{#set: ec-number=ec-3.6.1.23|ec-3.6.1.9}}
 
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{{#set: direction=left-to-right}}
 
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{{#set: common-name=nucleoside triphosphate pyrophosphohydrolase|dutp diphosphatase}}
 
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{{#set: nb gene associated=4}}
 
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{{#set: nb pathway associated=5}}
 
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{{#set: reconstruction category=annotation|orthology}}
 
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{{#set: reconstruction tool=pathwaytools|orthofinder}}
 
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{{#set: reconstruction comment=n.a}}
 
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{{#set: reconstruction source=bthetaiotaomicron|faecalibacterium|genome|ecoli|bifidobacterium|plantarum}}
 

Latest revision as of 11:22, 17 October 2022

Gene FSU_RS06065

  • transcription-direction:
    • negative
  • centisome-position:
    • 38.441074
  • left-end-position:
    • 1477292
  • right-end-position:
    • 1478755

Organism(s) associated with this gene

Reaction(s) associated




Retrieved from "http://gem-aureme.genouest.org//fsucgem/index.php?title=FSU_RS06065&oldid=94766"